Job Description P76004 Confidence 18.34% Date Thu Jan 5 12:17:15 GMT 2012 Rank 35 Aligned Residues 49 % Identity 20% Template c1o91B_ PDB info PDB header:collagen Chain: B: PDB Molecule:collagen alpha 1(viii) chain; PDBTitle: crystal structure of a collagen viii nc1 domain trimer Resolution 1.9 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	T	L	S	L	S	V	N	G	E	Q	R	Q	Q	G	T	T	A	D	M	I	H	K	I	V	P	L	I	A	Y	M	S	K	F	F	T	L	K	A	G	D	V	V	L	T	G	T	P	D	G	V	G	P	L	Q	S	G	D	E	L	T	V	T	F	D	G	H
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	W	V	A	L	F	K	N	N	E	P	M	M	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	E	Y	K	K	G	F	L	D	Q	A	S	G	S	A	V	L	L	L	R	P	G	D	Q	V	F	L	Q	M	P	S	E
Template Known Secondary structure										T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B	T	T	B														T	T										G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.																				.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions