Job Description P76004 Confidence 6.14% Date Thu Jan 5 12:17:15 GMT 2012 Rank 64 Aligned Residues 56 % Identity 21% Template c1mp9B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:tata-binding protein; PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus2 acidocaldarius Resolution 2.00 Å

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		17	.	.	20	.	.	.												.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Query Sequence		S	K	V	V	C	V	G	.	.	.	.	.	.	.	.	.	.	.	S	N	Y	A	K	H	I	K	E	M	G	S	A	V	P	E	E	P	V	L	F	I	K	P	E	T	A	L	C	D	L	R	Q	P	L	A	I	P	S	D	.	.	.	F	G	S	V	H	H	E	V	E
Query Conservation									.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation
Template Sequence		G	K	M	V	V	T	G	A	K	S	T	D	E	L	I	K	A	V	K	R	I	I	K	T	L	K	K	Y	G	M	Q	L	T	G	K	P	K	I	Q	I	Q	N	I	V	A	S	A	N	L	H	V	I	V	N	L	D	K	A	A	F	L	L	E	N	N	M	Y	E	P	E
Template Known Secondary structure		S								S	S																		T	T					S																												S	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions