Job Description P76004 Confidence 5.64% Date Thu Jan 5 12:17:15 GMT 2012 Rank 70 Aligned Residues 56 % Identity 16% Template c1d3uA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:tata-binding protein; PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei Resolution 2.40 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.												.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query Sequence		S	K	V	V	C	V	G	S	N	Y	A	K	H	I	K	E	M	.	.	.	.	.	.	.	.	.	.	.	G	S	A	V	P	E	E	P	V	L	F	I	K	P	E	T	A	L	C	D	L	R	Q	P	L	A	I	P	S	D	F	G	S	V	.	.	.	H	H	E	V	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation
Template Sequence		G	K	L	V	V	T	G	A	K	S	V	Q	D	I	E	R	A	V	A	K	L	A	Q	K	L	K	S	I	G	V	K	F	K	R	A	P	Q	I	D	V	Q	N	M	V	F	S	G	D	I	G	R	E	F	N	L	D	V	V	A	L	T	L	P	N	C	E	Y	E	P	E
Template Known Secondary structure		S								S	S																	T	T	T				S	S	S															S	S												T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions