Job Description P39173 Confidence 3.01% Date Thu Jan 5 11:58:21 GMT 2012 Rank 82 Aligned Residues 158 % Identity 14% Template c2xn1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris Resolution 2.30 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.			50	.	.	.											.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																									.									.	.					.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.									.	.					.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	R	K	L	D	E	L	D	L	I	V	V	D	H	P	Q	V	K	A	S	F	A	.	L	Q	G	A	H	L	L	S	.	.	W	K	P	A	.	.	.	.	.	.	.	.	.	.	G	E	E	E	V	L	W	L	S	N	N	T	P	F	K	N	G	V	A	I	R	G	G	V	P	V	C	W	P	W	F	G
Query Conservation																									.									.	.					.	.	.	.	.	.	.	.	.	.
Alig confidence																									.									.	.					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	K	F	D	D	Q	N	K	V	F	H	L	H	N	K	Q	I	S	Y	L	L	S	I	E	D	G	G	T	L	S	H	L	Y	F	G	G	A	V	K	N	Y	N	N	Q	L	K	Y	P	R	L	D	R	G	F	S	G	N	L	P	E	S	L	D	R	T	F	S	R	D	S	L	P	K	E	Y	S	S	A	G
Template Known Secondary structure							T	T	T	T							S	S									G	G	G												S				S	T	T								T	T					T	T				T	T			T	T	T	S		B	S			B	T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		P	A	A	Q	Q	G	.	.	.	.	L	P	A	H	G	F	A	R	N	L	P	W	T	L	K	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	D	A	D	G	V	A	L	T	F	E	L	T	Q	S	E	E	T	K	K	F	W	P	H	D	F	T	L	L	A	H	F	R	V	.
Query Conservation								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.													.
Template Conservation																																																														.	.	.	.	.	.	.
Template Sequence		E	M	D	F	H	T	P	A	T	I	V	R	N	P	D	G	S	N	A	L	F	L	A	Y	K	S	Y	K	I	E	D	G	K	P	D	L	K	G	L	P	H	S	W	T	K	E	D	D	E	A	Q	T	L	I	V	T	L	E	D	K	.	.	.	.	.	.	.	V	S	K	L	E	Y	D	L	L	Y	T	I	Y
Template Known Secondary structure		S	S			S			S						T	T	S																S					T	T	S						S	S	G	G	G											T	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.	.
								144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	K	T	C	E	I	D	L	E	S	H	G	E	F	E	T	T	S	A	L	H	T	Y	F	N	V	G	D	I	A	K	V	S	V	S	G	L	G	D	R
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	R	P	V	I	V	R	S	V	Q	V	H	N	H	G	E	E	A	V	Y	L	E	K	V	A	S	M	Q	M	D	Y	V	D	K	D	F	E	V	I	T	L	P	G	A	H
Template Known Secondary structure		T	T	S	S												S	S	S															S	S											B	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions