Job Description P39173 Confidence 5.09% Date Thu Jan 5 11:58:21 GMT 2012 Rank 53 Aligned Residues 42 % Identity 26% Template c2r5iL_ PDB info PDB header:viral protein Chain: L: PDB Molecule:l1 protein; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 18 Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		164	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.							.
Query SS confidence													.	.	.	.	.							.
Query Sequence		H	T	Y	F	N	V	G	D	I	A	K	.	.	.	.	.	V	S	V	S	G	L	.	G	D	R	F	I	D	K	V	N	D	A	K	E	N	V	L	T	D	G	I	Q	T	F	P	D
Query Conservation													.	.	.	.	.							.
Alig confidence													.	.	.	.	.							.
Template Conservation
Template Sequence		D	P	Y	F	R	V	P	A	G	G	G	N	K	Q	D	I	P	K	V	S	A	Y	Q	Y	R	V	F	R	V	Q	L	P	D	P	N	K	F	G	L	P	D	T	S	I	Y	N	P	E
Template Known Secondary structure		B	S	S	S		B		T	T	S	S	S	S	S		B		B			T	T	B											S	S	S	S			S		S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions