Job Description P39173 Confidence 100.00% Date Thu Jan 5 11:58:21 GMT 2012 Rank 14 Aligned Residues 256 % Identity 13% Template c1ygaA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.										.	.	.	.	90	.	.	.
Predicted Secondary structure														.																																																			.	.	.	.	.	.	.	.	.
Query SS confidence														.																																																			.	.	.	.	.	.	.	.	.
Query Sequence		D	E	L	D	L	I	V	V	D	H	P	Q	.	V	K	A	S	F	A	L	Q	G	A	H	L	L	S	W	K	P	A	G	E	E	E	V	L	W	L	S	N	N	T	P	F	K	N	G	V	A	I	R	G	G	V	P	V	C	W	P	W	F	G	.	.	.	.	.	.	.	.	.	P	A	A	Q	Q	G	L	P
Query Conservation														.																																																			.	.	.	.	.	.	.	.	.
Alig confidence														.																																									.	.									.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.
Template Sequence		N	K	Y	G	V	I	T	I	G	D	E	K	K	F	Q	A	T	I	A	P	L	G	A	T	L	V	D	L	K	V	N	G	Q	S	V	V	Q	G	Y	S	N	V	Q	D	Y	L	T	D	G	N	M	M	G	.	.	A	T	V	G	R	Y	A	N	R	I	A	K	G	V	F	S	L	D	D	G	P	H	K	L	T
Template Known Secondary structure			T	T								T	T	T							T	B	T	T								T	T				B				S	S	G	G	G	G	T	T		S	S		T	T	.	.					S	B		S			G	G	G					T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		94												.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																					.	.	.																																.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.																					.	.	.																																.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	.	.	H	G	F	A	R	N	L	P	W	T	L	K	S	H	H	E	D	A	D	G	.	.	.	V	A	L	T	F	E	L	T	Q	S	E	E	T	K	K	F	W	P	H	D	F	T	L	L	A	H	F	R	V	G	K	.	.	.	.	.	.	.	T	C	E	I	D	L	E
Query Conservation			.	.	.	.	.	.	.	.	.	.	.																					.	.	.																																.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.						.															.	.	.																																.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		V	N	N	C	G	N	T	N	H	S	S	I	S	S	L	N	L	.	K	Q	Y	K	A	S	P	V	E	N	P	S	K	G	V	Y	V	V	E	F	K	L	L	D	D	H	T	Q	P	N	P	N	E	F	P	G	D	L	E	V	T	V	K	Y	T	L	N	V	A	E	M	T	L	D	M	E	Y	Q	A	Q	L	V
Template Known Secondary structure				B	T	T	B			T	T	G	G	G		G	G	G	.	S	B											T	T												S	S	S	S	S				S	S	S												T	T	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.										.	.	.	210	.	.
Predicted Secondary structure																					.	.	.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		S	H	G	E	F	E	T	T	S	A	L	H	T	Y	F	N	V	G	D	.	.	.	.	.	.	I	A	K	V	S	V	S	G	L	G	D	R	F	I	.	.	.	.	.	D	K	V	N	D	A	K	E	N	V	L	T	D	G	I	Q	T	F	P	D	R	.	.	.	.	.	.	.	.	.	T	D	R	V	Y	L
Query Conservation																					.	.	.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	D	A	T	P	I	N	M	T	N	H	S	Y	F	N	L	N	K	V	K	S	E	K	S	I	R	G	T	E	V	K	V	C	S	N	K	S	L	E	V	T	E	G	A	L	L	P	T	G	K	I	I	E	R	N	I	A	T	F	D	S	T	K	P	T	V	L	H	E	D	T	P	V	F	D	C	T	F	I
Template Known Secondary structure			S	S					B							B		T	T	T	T	T		T	T			T	T						S									T	T	T											S			B	T	T		S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		213	.	.	.	.																	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.
Query Sequence		N	P	Q	D	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	I	N	D	E	A	L	N	R	I	I	A	V	G	H	Q	H	H	L	N	V	V	G	W	N	P	G	P	A	L	S	I	S	M	G	D	M	P	D	D	G	Y	K	T	F	V	C	V	E	T	A	Y	A	S	E	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																		.	.	.	.	.	.	.																	.	.	.
Template Conservation																																						.																		.	.	.	.	.	.	.
Template Sequence		I	D	A	N	K	D	L	K	T	T	D	S	V	S	V	N	K	L	V	P	V	F	K	A	Y	H	P	E	S	H	I	K	F	E	V	S	.	T	T	E	P	T	V	H	L	Y	T	G	D	N	L	C	G	K	.	.	.	.	.	.	.	F	V	P	R	S	G	F	A	V	Q	Q	G	R	Y	V	D	A	I	N
Template Known Secondary structure			T	T	T	T	T			S	S	B		T	T	T	S											T	T	T								.		S	S	S								T	T			T	T	.	.	.	.	.	.	.	S		T	T	S		B						S		S	S	G	G	G
Template Predicted Secondary structure																																						.																		.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.								.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
								274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	T	Q	K	V	T	K	E	K	P	A	H	L	A	Q	S	I	R
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	E	W	R	G	C	V	L	L	K	R	G	E	V	Y	T	S	K	T	Q	Y	K
Template Known Secondary structure							G	G	G				T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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