Job Description P50456 Confidence 94.64% Date Thu Jan 5 12:04:43 GMT 2012 Rank 278 Aligned Residues 64 % Identity 19% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	E	N	Q	P	G	H	I	D	Q	I	K	Q	T	N	A	G	A	V	Y	R	L	I	D	Q	L	G	P	V	S	R	I	D	L	S	R	L	A	Q	L	A	P	A	S	I	T	K	I	V	R	E	M	L	E	A	H	L	V	Q	E	L	E	I	K	E	A	G	N	R	G	R	P	A	V
Query Conservation
Alig confidence													.	.	.	.	.									.	.																																		.	.	.	.
Template Conservation													.	.	.	.	.									.	.																																		.	.	.	.
Template Sequence		F	V	N	G	R	P	L	P	D	S	T	.	.	.	.	.	R	Q	R	I	V	E	L	A	.	.	H	S	G	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	.	.	.	.	R	P	R	A	I	G	G	S	K	P	R	V
Template Known Secondary structure				T	T	S							.	.	.	.	.									.	.		T	T											T																	S			.	.	.	.	S					S					S	S
Template Predicted Secondary structure													.	.	.	.	.									.	.																																		.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions