Job Description P50456 Confidence 86.84% Date Thu Jan 5 12:04:43 GMT 2012 Rank 430 Aligned Residues 301 % Identity 10% Template c3cqyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 Resolution 2.30 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.																						.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure															.	.													.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.													.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	A	W	H	Y	L	S	L	R	I	S	R	.	.	G	E	I	F	L	A	L	R	D	L	S	S	.	.	.	K	L	V	V	E	E	S	Q	E	L	A	L	K	D	D	L	P	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	I	I	S	H	I	D	Q	F
Query Conservation															.	.													.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.													.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	N	K	A	Y	Y	I	G	L	X	S	G	T	S	X	D	G	V	D	A	V	L	V	D	F	A	G	E	Q	P	Q	L	I	G	T	H	T	E	T	I	P	T	H	L	L	K	G	L	Q	R	L	C	L	P	G	T	D	E	I	N	R	L	G	R	L	D	R	S	V	G	K	L	F	A	L	A	V	N	N	L
Template Known Secondary structure		T	T											T	T												S	S	S	S																					G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.
Predicted Secondary structure																																			.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		F	I	R	H	Q	K	K	L	E	R	L	T	S	I	A	I	T	L	P	G	I	I	D	T	E	N	G	I	V	H	R	M	P	.	.	F	Y	E	D	V	K	E	M	P	L	G	E	A	L	E	Q	H	T	G	V	P	V	Y	I	Q	H	D	I	S	A	W	T	M	A	.	.	.	.	.	.	.	.	.	E	A
Query Conservation																																			.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.										.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		L	A	K	T	K	I	A	K	D	E	I	I	A	I	G	S	.	.	.	.	.	.	.	.	H	G	Q	T	V	R	H	X	P	N	L	E	V	G	F	T	L	Q	I	G	D	P	N	T	I	A	T	E	T	G	I	D	V	I	A	D	F	R	R	K	D	I	A	L	G	G	Q	G	A	P	L	V	P	A	F	H
Template Known Secondary structure									G	G	G							.	.	.	.	.	.	.	.									T	T	S	S	S							S										S	S													T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																											.																.	.
Query SS confidence																											.																.	.
Query Sequence		L	F	G	A	S	R	G	A	R	D	V	I	Q	V	V	I	D	H	N	V	G	A	G	V	I	.	T	D	G	H	L	L	H	A	G	S	S	S	L	V	E	.	.	I	G	H	T	Q	V	D	P	Y	G	K	R	C	Y	C	G	N	H	G	C	L	E	T	I	A	S	V	D	S	I	L	E	L	A	Q	L	R
Query Conservation																											.																.	.
Alig confidence																											.																.	.
Template Conservation
Template Sequence		Q	Q	T	F	A	Q	V	G	K	K	R	V	I	L	N	I	G	G	I	A	N	I	T	Y	L	P	G	N	S	E	E	V	L	G	F	D	T	G	P	G	N	T	L	I	D	A	W	V	Q	Q	V	K	N	E	S	Y	D	K	N	G	A	W	A	A	S	G	K	T	D	P	Q	L	L	A	Q	L	L	S	H	P
Template Known Secondary structure								T	T									S	S									S	S	S	S										S	S														S	S		G	G	G						S												T		G
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																														.
Query SS confidence																									.	.																														.
Query Sequence		L	N	Q	S	M	S	S	M	L	H	G	Q	P	L	T	V	D	S	L	C	Q	A	A	.	.	L	R	G	D	L	L	A	K	D	I	I	T	G	V	G	A	H	V	G	R	I	L	A	I	M	V	N	L	F	.	N	P	Q	K	I	L	I	G	S	P	L	S	K	A	A	D	I	L	F	P	V	I	S	D	S
Query Conservation																									.	.																														.
Alig confidence																									.	.																														.													.
Template Conservation																																																																					.
Template Sequence		Y	F	S	L	A	Y	P	K	S	T	G	R	E	L	F	N	Q	A	W	L	E	Q	Q	L	S	A	F	N	Q	L	N	E	E	D	I	Q	S	T	L	L	D	L	T	C	H	S	I	A	Q	D	I	L	K	L	A	Q	E	G	E	L	F	V	C	G	G	G	A	.	F	N	A	E	L	X	Q	R	L	A	A	L
Template Known Secondary structure		G	G	G	S		S	S					S	S	S	S	S								T	T	T		T	T	S																										S	S							S	G	G	G	.	G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.
		359	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		I	R	Q	.	Q	A	L	P	A	Y	S	Q	H	I	S	V	E	S	T	Q	F	S	N	Q	G	T	M	A	G	A	A	L	V	K	D	A	M	Y	N	G
Query Conservation					.
Alig confidence					.												.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		L	P	G	Y	R	I	D	T	T	S	A	L	G	V	D	.	.	.	.	.	.	P	K	W	A	E	G	I	A	F	A	W	L	A	X	R	Y	Q	L	G
Template Known Secondary structure			T	T						G	G	G	G	T			.	.	.	.	.	.	T	T	T															T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions