Job Description P50456 Confidence 98.71% Date Thu Jan 5 12:04:43 GMT 2012 Rank 58 Aligned Residues 269 % Identity 12% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.
Predicted Secondary structure																																			.	.	.	.						.	.	.	.																														.
Query SS confidence																																			.	.	.	.						.	.	.	.																														.
Query Sequence		Y	L	S	L	R	I	S	R	G	E	I	F	L	A	L	R	D	L	S	S	K	L	V	V	E	E	S	Q	E	L	A	L	K	.	.	.	.	D	D	L	P	L	.	.	.	.	L	D	R	I	I	S	H	I	D	Q	F	F	I	R	H	Q	K	K	L	E	R	L	T	S	I	A	I	T	L	.	P	G	I	I
Query Conservation																																			.	.	.	.						.	.	.	.																														.
Alig confidence																			.																.	.	.	.						.	.	.	.																														.				.
Template Conservation																			.																																																														.
Template Sequence		A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	.	E	D	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	S	Q	G	P	G	L	.
Template Known Secondary structure								S	S	S									.	S	S													S	S		S																										T			T	T	T										S	S		.
Template Predicted Secondary structure																			.																																																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	E	N	G	I	V	H	R	M	P	F	Y	E	D	V	K	E	M	P	L	G	E	A	L	E	Q	H	T	G	V	P	V	Y	I	Q	H	D	I	S	A	W	T	M	A	E	A	L	F	G	A	S	R	G	A	R	D	V	I	Q	V	V	I	D	H	N	V	G	A	G	V	I	T	D	G	H	L	L	H	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	P	A	L	R	V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	.	.	.	F	G	V	K	D	P	V	G	L	Y	V	S	G	G	N	T	Q	V	L	A	L	E	G	G	R	Y	R	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.																		T	T															G	G	G	G	.	.	.	G	T			S								S	S									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template SS confidence
													81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.																				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	S	S	L	V	E	I	G	H	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	P	Y	G	K	R	C	Y	C	G	N	H	G	C	L	E	T	I	A	S	V	D	S	I	L	E	L	A	Q	L	R	L	N	Q	S	M	S	S	M	L	H	G	Q	P	L	T	V	D
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		G	E	T	L	D	I	G	I	G	N	A	I	D	V	F	A	R	E	L	G	L	G	F	P	G	G	P	K	V	E	K	L	A	E	K	G	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	.	.	.	.	.	.	.	.
Template Known Secondary structure				B	S	S	S													T	T			S	S											T			S										T	T																	T			S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	C	Q	A	A	L	R	G	D	L	L	A	K	D	I	I	T	G	V	G	A	H	V	G	R	I	L	A	I	M	V	N	L	F	N	P	Q	K	I	L	I	G	S	P	L	S	K	A	A	D	I	L	F	P	V	I	S	D	S	I	R	Q	Q	A	L	P	A	Y	S	Q	H	I	S	V	E	S	T	Q	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																						.																											.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																						.																											.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R	A	V	A	H	T	E	K	D	E	V	V	L	V	G	G	V	A	.	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F	F	V	P	P	Y	D	.	.	.	.	L	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.																												S						S	G	G	G	.	G																T								G	G	.	.	.	.	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																						.																											.	.	.	.
Template SS confidence
												219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	Q	G	T	M	A	G	A	A	L	V	K	D	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	N	G	A	M	I	A	Y	T	G	L	R	M	Y	K
Template Known Secondary structure		S	S		S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions