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Job DescriptionP50456
Confidence96.82%DateThu Jan 5 12:04:43 GMT 2012
Rank199Aligned Residues265
% Identity15%Templatec1hpmA_
PDB info PDB header:hydrolase (acting on acid anhydrides)Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90.........100.........
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Query Sequence  WHYLSLRISRGEIFLALRDLSSKLV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV
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SSTT


TTS
SS


SS
TTTTTT
GGG

GGGTTT

TT
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   110.........120.........130.........140.........150.........160........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . VEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP
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Template Sequence  QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTV. . . . . . . . . . . . . . . PA
Template Known Secondary structure  TT
SSTTTT
TS


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T
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   84.....90.........100.........110.........120.........130.........140...... ..
 
   169170.........180.........190.........200.........210.........220.........230 .........240.....
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Query Sequence  FYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVIT. . . DGHLLHAGSSSLVEI
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Template Sequence  YFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL
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TT
TTTTS

SS

SS
TTTT
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   149150.........160.........170.........180.........190.........200.........210.........220........
 
   246...250.........260.........270.........280.........290.........300.....
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Query Sequence  GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL. . . . . . . . . . . . . . . . . . . .
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Template Sequence  G. . . . . . . . . . . . . . . . . . . . GEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLY
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TT
TTTSS
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   229 230.........240.........250.........260.........270.........280........
 
   306...310.........320.........330.... .....340.........350.........360.........370..
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Query Sequence  . . . . . . . . RGDLLAKDIITGVGAHVGRILAIMVNLFN. . . . . PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS
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Template Sequence  EGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRI. PKIQKLLQDFF. . . . . . . . . NGKE
Template Known Secondary structure  TTTT

GGG

SGGGG
.T.........TT

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   289290.........300.........310.........320.........330.........340... ......350.... ....
 
   373......380.........390....
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Query Sequence  VESTQFSNQGTMAGAALVKDAM
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Template Sequence  LNKSINPDEAVAYGAAVQAAIL
Template Known Secondary structure 
B
SS
TTT
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   359360.........370.........380
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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