Job Description P0AAE5 Confidence 100.00% Date Thu Jan 5 11:12:42 GMT 2012 Rank 2 Aligned Residues 400 % Identity 29% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	K	L	G	L	S	A	L	T	A	L	V	L	S	S	M	L	G	A	G	V	F	S	L	P	Q	N	M	A	A	V	A	S	P	A	A	L	L	I	G	W	G	I	T	G	A	G	I	L	L	L	A	F	A	M	L	I	L	T	R	I	R	P	E	L	D	G	G	I	F	T	Y	A	R	E	G	F	G	E
Query Conservation
Alig confidence																																					.	.																												.
Template Conservation																																					.	.																												.
Template Sequence		A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	.	.	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	.	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P
Template Known Secondary structure			S	S													T	T	S	S	S	S	T	T	T					T	T	S	S				.	.		S																						T	T			.		S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																																					.	.																												.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	F	C	S	A	W	G	Y	W	L	C	A	V	I	A	N	V	S	Y	L	V	I	V	F	S	A	L	S	F	F	T	D	T	P	E	L	R	L	F	G	D	G	N	T	W	Q	S	I	V	G	A	S	A	L	L	W	I	V	H	F	L	I	L	R	G	V	Q	T	A	A	S	I	N	L	V	A	T	L
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.
Template Sequence		F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	.	.	.	.	.	.	.	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V
Template Known Secondary structure													T	T	T	T											T	G	G	G	S	S	S	S					S	S	S	.	.	.	.	.	.	.																			S		S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		A	K	L	L	P	L	G	L	F	V	V	L	A	M	M	M	F	K	L	D	T	F	K	L	D	F	T	G	L	A	L	G	V	P	V	W	E	Q	V	K	N	T	M	L	I	T	L	W	V	F	I	G	V	E	G	A	V	V	V	S	A	R	A	R	N	.	K	R	D	V	G	K	A	T	L	L	A	V	L	S
Query Conservation																																																																			.
Alig confidence																											.	.																																							.
Template Conservation																											.	.
Template Sequence		L	A	L	I	P	I	V	G	I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	.	.	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I
Template Known Secondary structure																	S			S	S						.	.		S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	V	Y	L	L	V	T	L	L	S	L	G	V	V	A	R	P	E	L	A	E	I	R	N	P	S	M	A	G	L	M	V	E	M	M	G	P	W	G	E	I	I	I	A	A	G	L	I	V	S	V	C	G	A	Y	L	S	W	T	I	M	A	A	E	V	P	F	L	A	A	T	H	K	A	F	P	R	I
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	V	C	Y	V	L	S	T	T	A	I	M	G	M	I	P	N	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I
Template Known Secondary structure										T	T				S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T																T	T	S	S	T	T	T	S	S		S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.							.
Predicted Secondary structure																																				.	.																																						.	.	.	.	.	.
Query SS confidence																																				.	.																																						.	.	.	.	.	.
Query Sequence		F	A	R	Q	N	A	Q	A	A	P	S	A	S	L	W	L	T	N	I	C	V	Q	I	C	L	V	L	I	W	L	T	G	S	D	.	.	Y	N	T	L	L	T	I	A	S	E	M	I	L	V	P	Y	F	L	V	G	A	F	L	L	K	I	A	T	R	P	L	H	K	A	V	G	V	.	.	.	.	.	.	G
Query Conservation																																				.	.																																						.	.	.	.	.	.
Alig confidence																																				.	.																																						.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L	A	V	T	T	I
Template Known Secondary structure							S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	I	Y	G	L	W	L	L	Y	A	S	G	P	M	H	L	L	L	S	V	V	L	Y	A	P	G	L	L	V	F	L	Y	A	R	K	T	H	T	H	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	L	Y	C	I	W	A	V	V	G	S	G	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A	L	N	Y	N	R	L	H	K	N	P
Template Known Secondary structure												S	S																		T	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.