Job Description P0AAE5 Confidence 87.51% Date Thu Jan 5 11:12:42 GMT 2012 Rank 8 Aligned Residues 334 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																						.	.														.
Query SS confidence																						.	.														.
Query Sequence		T	G	A	G	I	L	L	L	A	F	A	M	L	I	L	T	R	I	R	P	.	.	E	L	D	G	G	I	F	T	Y	A	R	E	G	.	F	G	E	L	I	G	F	C	S	A	W	G	Y	W	L	C	A	V	I	A	N	V	S	Y	L	V	I	V	F	S	A	L	S	F	F	T	D	T	P	E	L	R	L	F
Query Conservation																						.	.														.
Alig confidence																						.	.														.
Template Conservation
Template Sequence		A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H
Template Known Secondary structure																	T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.										180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																										.																																		.	.	.	.	.	.	.	.	.
Query SS confidence																										.																																		.	.	.	.	.	.	.	.	.
Query Sequence		G	D	G	N	T	W	Q	S	I	V	G	A	S	A	L	L	W	I	V	H	F	L	I	L	.	R	G	V	Q	T	A	A	S	I	N	L	V	A	T	L	A	K	L	L	P	L	G	L	F	V	V	L	A	M	M	M	F	K	.	.	.	.	.	.	.	.	.	L	D	T	F	K	L	D	F	T	G	L	A	L
Query Conservation																										.																																		.	.	.	.	.	.	.	.	.
Alig confidence																										.																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I
Template Known Secondary structure		T																				S	S				T	T																																																T					S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		G	V	P	V	W	E	Q	V	K	N	T	M	L	I	T	L	W	V	F	I	G	V	E	G	A	V	V	V	S	A	R	A	R	N	K	R	D	V	G	K	A	T	L	L	A	V	L	S	A	L	G	V	Y	L	L	V	T	L	L	S	L	G	V	V	A	R	P	E	L	A	E	I	R	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																																				.	.																																						.	.	.	.	.	.	.
Template Conservation																																				.	.
Template Sequence		A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	.	.	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I
Template Known Secondary structure		S								T											T											T		S	S	.	.																																			T	T	S
Template Predicted Secondary structure																																				.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
				266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	P	S	M	A	G	L	M	V	E	M	M	G	P	W	G	E	I	I	I	A	A	G	L	I	V	S	V	C	G	A	Y	L	S	W	T	I	M	A	A	E	V	P	F	L	A	A	T	H	K	A	F	P	R	I	F	A	R	Q	N	A	Q	A	A	P	S	A	S	L	W	L	T	N	I	C	V	Q	I
Query Conservation		.	.
Alig confidence		.	.																																																								.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	.	.	.	.	.	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G
Template Known Secondary structure		G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S		.	.	.	.	.	S	S		S	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.						.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	V	L	I	W	L	T	G	S	D	Y	N	T	L	L	T	I	A	S	E	M	I	L	V	P	Y	F	L	V	G	A	F	L	L	K	I	A	T	R	P	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K
Template Known Secondary structure									S	S																																T
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions