Job Description P0AAE5 Confidence 100.00% Date Thu Jan 5 11:12:42 GMT 2012 Rank 3 Aligned Residues 419 % Identity 12% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	K	L	G	L	S	A	L	T	A	L	V	L	S	S	M	L	G	A	G	V	F	S	L	P	Q	N	M	A	A	V	A	S	P	A	A	L	L	I	G	W	G	I	T	G	A	G	I	L	L	L	A	F	A	M	L	I	L	T	R	I	R	P	E	L	D	G	G	I	F	T	Y	A	R	E	G	F	G	E
Query Conservation
Alig confidence																																																																		.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	.	I	N	F	T	V	A	A	R	M	P	F	G	I
Template Known Secondary structure		G			B															S	T										T	T	T	S																								T								.	.	.							T	T	T	T	S		T
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	F	C	S	A	W	G	Y	W	L	C	A	V	I	A	N	V	S	Y	L	V	I	V	F	S	A	L	S	F	F	T	D	T	P	E	L	R	L	F	G	D	G	N	T	W	Q	S	I	V	G	A	S	A	L	L	W	I	V	H	F	L	I	L	R	G	V	Q	T	A	A	S	I	N	L	V	A	T	L
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.
Template Sequence		R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	.	.	.	.	.	.	.	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P
Template Known Secondary structure		T	T	T																																						.	.	.	.	.	.	.																		T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.																																														.
Query SS confidence																						.																																														.
Query Sequence		A	K	L	L	P	L	G	L	F	V	V	L	A	M	M	M	F	K	L	D	.	T	F	K	L	D	F	T	G	L	A	L	G	V	P	V	W	E	Q	V	K	N	T	M	L	I	T	L	W	V	F	I	G	V	E	G	A	V	V	V	S	A	R	A	R	N	.	K	R	D	V	G	K	A	T	L	L	A	V	L
Query Conservation																						.																																														.
Alig confidence																						.																																														.
Template Conservation
Template Sequence		V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A
Template Known Secondary structure																			T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	G	V	Y	L	L	V	T	L	L	S	L	G	V	V	A	R	P	E	L	A	E	I	R	N	P	S	M	A	G	L	M	V	E	M	M	G	P	W	G	E	I	I	I	A	A	G	L	I	V	S	V	C	G	A	Y	L	S	W	T	I	M	A	A	E	V	P	F	L	A	A	T	H	K	A	F	P	R
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	.	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R
Template Known Secondary structure																											S		S											T																				T	T					.		T											S	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	A	R	Q	N	A	Q	A	A	P	S	A	S	L	W	L	T	N	I	C	V	Q	I	C	L	V	L	I	W	L	T	G	S	D	Y	N	T	L	L	T	I	A	S	E	M	I	L	V	P	Y	F	L	V	G	A	F	L	L	K	I	A	T	R	P	L	H	K	A	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.
Template Sequence		V	F	T	F	K	T	.	.	.	.	.	.	.	.	.	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y
Template Known Secondary structure		T						.	.	.	.	.	.	.	.	.												T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.										.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
										390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	V	G	A	C	I	Y	G	L	W	L	L	Y	A	S	G	P	M	H	L	L	L	S	V	V	L	Y	A	P	G	L	L	V	F	L	Y	A	R	K	T	H	T	H	D	N	V	L	N	R	Q	E
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N
Template Known Secondary structure		B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.