Job Description P37691 Confidence 69.76% Date Thu Jan 5 11:57:13 GMT 2012 Rank 31 Aligned Residues 109 % Identity 17% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	H	N	E	N	Q	V	L	A	M	P	S	A	I	S	V	A	V	L	P	D	S	P	H	A	R	E	M	A	T	K	A	H	N	S	G	H	E	V	L	I	H	L	P	M	A	P	L	S	K	Q	P	L	E	K	N	T	L	R	P	E	M	S	S	D	E	I	E	R	I	I	R	S	A	V	N	N	V	P
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Q	K	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	T	H	V	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	V	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S							T	T	S	S								S			T	T	T											T	T							G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.														60	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	V	G	I	N	N	H	M	G	S	K	M	T	S	N	L	F	G	M	Q	K	V	M	Q	A	L	E	R	Y	N	L	Y	F	L	D	S	V	T	I	G	N	T	Q	A	M	R	A	A	Q	G	T	G	V	K	V	I	K	R	K	V	F	L	D	D	S	Q	N	E	A	D	I	R	V	Q	F	N	R	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	K	N	D	D	Y	A	I	D	F	L	C	T	E	I	C	P	D	G	I	I	.	.	.	.	.	.	S	T	R	G	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	.	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.				S										T	T			S				.	.	.	.	.	.		S											T	T								.				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																						.
Template SS confidence
														65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions