Job Description P00893 Confidence 100.00% Date Thu Jan 5 10:57:03 GMT 2012 Rank 10 Aligned Residues 522 % Identity 43% Template c1jscA_ PDB info PDB header:lyase Chain: A: PDB Molecule:acetohydroxy-acid synthase; PDBTitle: crystal structure of the catalytic subunit of yeast2 acetohydroxyacid synthase: a target for herbicidal3 inhibitors Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	M	L	S	G	A	E	M	V	V	R	S	L	I	D	Q	G	V	K	Q	V	F	G	Y	P	G	G	A	V	L	D	I	Y	D	A	L	H	T	V	G	G	I	D	H	V	L	V	R	H	E	Q	A	A	V	H	M	A	D	G	L	A	R	A	T	G	E	V	G	V	V	L	V	T	S	G	P	G	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	G	L	T	G	G	Q	I	F	N	E	M	M	S	R	Q	N	V	D	T	V	F	G	Y	P	G	G	A	I	L	P	V	Y	D	A	I	H	N	S	D	K	F	N	F	V	L	P	K	H	E	Q	G	A	G	H	M	A	E	G	Y	A	R	A	S	G	K	P	G	V	V	L	V	T	S	G	P	G	A	T
Template Known Secondary structure		T	T	T		B												T	T										G	G	G											T	T	S						S	S																S	S								S	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	I	T	G	I	A	T	A	Y	M	D	S	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	D	M	V	G	I	S	R	P	V	V	K	H	S	F	L	V	K	Q	T	E	D	I	P	Q	V	L	K	K	A	F	W	L	A	A	S	G	R	P	G	P	V	V	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	V	T	P	M	A	D	A	F	A	D	G	I	P	M	V	V	F	T	G	Q	V	P	T	S	A	I	G	T	D	A	F	Q	E	A	D	V	V	G	I	S	R	S	C	T	K	W	N	V	M	V	K	S	V	E	E	L	P	L	R	I	N	E	A	F	E	I	A	T	S	G	R	P	G	P	V	L	V	D
Template Known Secondary structure		T	T											T												G	G	G	T	T	S			T	T								T	S	T	T	S	S							S	G	G	G														S	S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	S	M	R	S	Y	N	P	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	.	I	T	A	G	C	H	Q	Q	L	K	E	T	V	E	A	L	N	L	P	V	V	C
Query Conservation																																																											.
Alig confidence															.	.	.	.																																									.
Template Conservation															.	.	.	.
Template Sequence		L	P	K	D	V	T	A	A	I	L	R	N	P	.	.	.	.	I	P	T	K	T	T	L	P	S	A	Q	D	E	F	V	M	Q	S	I	N	K	A	A	D	L	I	N	L	A	K	K	P	V	L	Y	V	G	A	G	I	L	N	H	A	D	G	P	R	L	L	K	E	L	S	D	R	A	Q	I	P	V	T	T
Template Known Secondary structure									S	B			S		.	.	.	.			G	G	G	G	S				T																			S	S							G	G	G	G	S	S	T	T												T	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.										.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.
Query Sequence		S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V	G	V	R	F	D	D	R	T	T	N	N	L	A	K	Y	.	.	.	.	.	.	.	.	.	C	P	N	A	T	V	L	H	I	D	I	D	P	T	S	I
Query Conservation																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	Q	G	L	G	S	F	D	Q	E	D	P	K	S	L	D	M	L	G	M	H	G	C	A	T	A	N	L	A	V	Q	N	A	D	L	I	I	A	V	G	A	R	F	D	D	R	V	T	G	N	I	S	K	F	A	P	E	A	R	R	A	A	A	E	G	R	G	G	I	I	H	F	E	V	S	P	K	N	I
Template Known Secondary structure			T	T	T	T	T	S	S		T	T	S	T	T						S	T	T	S												S						S									S	S	G	G	G	S	S									T	T	S								S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		S	K	T	V	T	A	D	I	P	I	V	G	D	A	R	Q	V	L	E	Q	M	L	E	L	L	S	Q	E	S	A	H	Q	P	L	D	E	I	R	D	W	W	Q	Q	I	E	Q	W	R	A	R	Q	C	L	K	Y	D	T	H	S	E	K	I	K	P	Q	A	V	I	E	T	L	W	R	L	T	K	.	.	.	G
Query Conservation																																																																														.	.	.
Alig confidence																											.	.																						.	.																											.	.	.
Template Conservation																											.	.																						.	.
Template Sequence		N	K	V	V	Q	T	Q	I	A	V	E	G	D	A	T	T	N	L	G	K	M	M	S	K	I	.	.	F	P	V	K	E	R	S	E	W	F	A	Q	I	N	K	W	K	K	E	Y	P	.	.	Y	A	Y	M	E	E	T	P	G	S	K	I	K	P	Q	T	V	I	K	K	L	S	K	V	A	N	D	T	G	R
Template Known Secondary structure		T	S	S	S			S					S										G	G	G	S	.	.																		T	T	S		.	.								S	S	S																		T		S
Template Predicted Secondary structure																											.	.																						.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.			.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.			460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Y	V	T	S	D	V	G	Q	H	Q	M	F	A	A	L	Y	Y	P	F	D	K	P	R	R	W	I	N	S	G	G	L	G	T	M	G	F	G	L	P	A	A	L	G	V	K	M	A	L	P	E	E	T	V	V	C	V	T	G	D	G	S	I	Q	M	N	I	Q	E	L	S	T	A	L	Q	Y	E	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	V	I	V	T	T	G	V	G	Q	H	Q	M	W	A	A	Q	H	W	T	W	R	N	P	H	T	F	I	T	S	G	G	L	G	T	M	G	Y	G	L	P	A	A	I	G	A	Q	V	A	K	P	E	S	L	V	I	D	I	D	G	D	A	S	F	N	M	T	L	T	E	L	S	S	A	V	Q	A	G	T	P
Template Known Secondary structure									S	S										S				S	T	T							S	S			T	T														T	T	S															G	G	G								T
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	V	N	L	N	N	R	Y	L	G	M	V	K	Q	W	Q	D	M	I	Y	S	G	R	H	S	Q	S	Y	M	Q	S	L	P	D	F	V	R	L	A	E	A	Y	G	H	V	G	I	Q	I	S	H	P	H	E	L	E	S	K	L	S	E	A	L	E	Q	V	R	N	N	R	L	V	F	V	D	V	T	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Sequence		V	K	I	L	I	L	N	N	E	E	S	H	T	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	P	D	F	I	K	L	A	E	A	M	G	L	K	G	L	R	V	K	K	Q	E	E	L	D	A	K	L	K	E	F	V	S	.	.	.	T	K	G	P	V	L	L	E	V	E	V
Template Known Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	S							S														.	.	.		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.																		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.				.	620	.	.	.	.	.	.	.	.	.
		548	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		646	.	.