Return to main results Retrieve Phyre Job Id

Job DescriptionP09996
Confidence21.41%DateThu Jan 5 11:02:37 GMT 2012
Rank38Aligned Residues27
% Identity19%Templated1ku7a_
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90.........100
Predicted Secondary structure 


Query SS confidence 


























Query Sequence  AVSDLGQKLGVDTSTASSLLAEQLPKI
Query Conservation   
  

 
 

        

  

  
Alig confidence 


























Template Conservation 
  


  



   

    


 

Template Sequence  TLEEVGAYFGVTRERIRQIENKALRKL
Template Known Secondary structure 
TS
Template Predicted Secondary structure 



Template SS confidence 


























   397..400.........410.........420...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions