Return to main results Retrieve Phyre Job Id

Job DescriptionP09996
Confidence19.68%DateThu Jan 5 11:02:37 GMT 2012
Rank42Aligned Residues32
% Identity19%Templated1ku3a_
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90.........100.....
Predicted Secondary structure 




Query SS confidence 































Query Sequence  AVSDLGQKLGVDTSTASSLLAEQLPKIIDALS
Query Conservation   
  

 
 

        

  

  

 

Alig confidence 































Template Conservation 
  


  



   

    


 


   
Template Sequence  TLEEVGAYFGVTRERIRQIENKALRKLKYHES
Template Known Secondary structure 
T

TT
Template Predicted Secondary structure 







Template SS confidence 































   397..400.........410.........420........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions