Job Description P38038 Confidence 99.93% Date Thu Jan 5 11:57:50 GMT 2012 Rank 40 Aligned Residues 234 % Identity 18% Template c2bgjB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms Resolution 2.1 Å

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		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		P	L	V	A	S	L	S	V	N	Q	K	I	T	G	R	N	S	E	K	D	V	R	H	I	E	I	D	L	G	D	S	G	M	R	Y	Q	P	G	D	A	L	G	V	W	.	Y	Q	N	D	P	A	L	V	K	E	L	V	E	L	L	W	L	K	G	D	E	P	V	T	V	E	G	K	T	L	P	L	N	E	A
Query Conservation																																														.
Alig confidence															.	.	.	.	.													.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	A	Q	T	V	T	S	V	R	H	W	T	.	.	.	.	.	D	T	L	F	S	F	R	V	T	R	P	Q	.	T	L	R	F	R	S	G	E	F	V	M	I	G	L	L	D	D	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															.	.	.	.	.	T	T										T	.	T					T	T										T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	W	H	F	E	L	T	V	N	T	A	N	I	V	E	N	Y	A	T	L	T	R	S	E	T	L	L	P	L	V	G	D	K	A	K	L	Q	H	Y	A	A	T	T	P	I	V	D	M	V	R	F	S	P	A	Q	L	D	A	E	A	L	I	N	L	L	R	P	L	T	P	R	L	Y	S	I	A	S	S	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	I	M	R	A	Y	S	I	A	S	P	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																					60	.	.	.	.	.	.	.	.	.	70	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		A	E	V	E	N	E	V	H	V	T	V	G	V	V	R	Y	D	V	E	G	R	A	R	A	G	G	A	S	S	F	L	A	D	R	V	E	E	E	G	E	V	R	V	F	I	E	H	N	D	N	F	R	L	P	A	N	P	E	.	T	P	V	I	M	I	G	P	G	T	G	I	A	P	F	R	A	F	M	Q	Q
Query Conservation																																																												.
Alig confidence			.	.													.	.	.	.	.	.	.	.											.																									.
Template Conservation			.	.													.	.	.	.	.	.	.	.											.
Template Sequence		W	.	.	D	E	E	L	E	F	Y	S	I	K	V	P	.	.	.	.	.	.	.	.	D	G	P	L	T	S	R	L	Q	H	.	I	K	V	G	E	Q	I	I	L	R	P	K	P	V	G	T	L	V	I	D	A	L	L	P	G	K	R	L	W	F	L	A	T	G	T	G	I	A	P	F	A	S	L	M	R	E
Template Known Secondary structure		T	.	.		S										T	.	.	.	.	.	.	.	.	T		T	T					T	T	.			T	T												S		S	G	G	G	B				S								G	G	G	G							T	T
Template Predicted Secondary structure			.	.													.	.	.	.	.	.	.	.											.
Template SS confidence
		73			.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.									510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.													.
Query SS confidence																																						.	.	.	.	.	.	.	.													.
Query Sequence		R	A	A	D	E	A	P	G	K	N	W	L	F	F	G	N	P	H	F	T	E	D	F	L	Y	Q	V	E	W	Q	R	Y	V	K	D	G	.	.	.	.	.	.	.	.	V	L	T	R	I	D	L	A	W	S	R	D	.	Q	K	E	K	V	Y	V	Q	D	K	L	R	E	Q	G	A	E	L	W	R	W	I	N
Query Conservation																																						.	.	.	.	.	.	.	.													.
Alig confidence																						.																.	.	.	.	.	.	.	.													.																.	.
Template Conservation																						.																																																				.	.
Template Sequence		P	E	A	Y	E	K	F	D	E	V	I	M	M	H	A	C	R	T	V	A	.	E	L	E	Y	G	R	Q	L	V	E	A	L	Q	E	D	P	L	I	G	E	L	V	E	G	K	L	K	Y	Y	P	T	T	T	R	E	E	F	H	H	M	G	R	I	T	D	N	L	A	S	G	K	.	.	V	F	E	D	L	G
Template Known Secondary structure									S									S	S	G	G	.	G	G													S	T	T					T		S									S	S	S			S	S	B	S									S		.	.						T
Template Predicted Secondary structure																						.																																																				.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.
		545							.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	G	A	H	I	Y	V	C	G	D	A	N	R	M	A	K	D	V	E	Q	A	L	L	E	V	I	A	E	F	G	G	M	D	T	E	A	A	D	E	F	L	S	E	L	R	V	E	R	R	Y	Q	R	D	V	Y
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.										.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	P	M	N	P	E	T	D	R	A	M	V	C	G	S	.	L	A	F	N	V	D	V	M	K	V	L	E	S	Y	G	L	R	E	G	A	N	.	.	.	.	.	.	.	.	.	.	.	.	S	E	P	R	E	F	V	V	E	K	A
Template Known Secondary structure							T	T	T									.														T	T			B			S	.	.	.	.	.	.	.	.	.	.	.	.	S	S		B	S						S
Template Predicted Secondary structure																		.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.													.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions