Job Description P38038 Confidence 100.00% Date Thu Jan 5 11:57:50 GMT 2012 Rank 8 Aligned Residues 285 % Identity 32% Template c1jb9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms Resolution 1.70 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	V	A	T	G	A	V	N	E	I	H	T	S	P	Y	S	K	D	A	P	L	V	A	S	L	S	V	N	Q	K	I	T	G	R	N	S	E	K	D	V	R	H	I	E	I	D	L	G	D	S	G	M	R	Y	Q	P	G	D	A	L	G	V	W	Y	Q	N	D	P	A	L	V	K	E	L	V	E	L	L	W
Query Conservation
Alig confidence																																																		.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	L	H	L	E	S	A	K	E	P	P	L	N	T	Y	K	P	K	E	P	F	T	A	T	I	V	S	V	E	S	L	V	G	P	K	A	P	G	E	T	C	H	I	V	I	D	H	.	G	G	N	V	P	Y	W	E	G	Q	S	Y	G	V	I	P	P	G	E	N	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		G	G	G	G			S	S					S	B	B	T	T	B													S		T	T	S	S	S										.	T	T	S	S				T	T								S	S	B		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	G	D	E	P	V	T	V	E	G	K	T	L	P	L	N	E	A	L	Q	W	H	F	E	L	T	V	N	T	A	N	I	V	E	N	Y	A	T	L	T	R	S	E	T	L	L	P	L	V	G	D	K	A	K	L	Q	H	Y	A	A	T	T	P	I	V	D	M	V	R	F	S	P	A	Q	L	D	A	E	A
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.						.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																				.	.	.	.	.
Query SS confidence																					.	.	.																				.	.	.	.	.
Query Sequence		L	I	N	L	L	R	P	L	T	P	R	L	Y	S	I	A	S	S	Q	.	.	.	A	E	V	E	N	E	V	H	V	T	V	G	V	V	R	Y	D	V	E	.	.	.	.	.	G	R	A	R	A	G	G	A	S	S	F	L	A	D	R	V	E	E	E	G	E	V	R	V	F	I	E	H	N	D	N	F	R	L
Query Conservation																					.	.	.																				.	.	.	.	.
Alig confidence																					.	.	.																				.	.	.	.	.															.
Template Conservation																																																														.
Template Sequence		P	K	K	P	G	A	P	Q	N	V	R	L	Y	S	I	A	S	T	R	Y	G	D	N	F	D	G	R	T	G	S	L	C	V	R	R	A	V	Y	Y	D	P	E	T	G	K	E	D	P	S	K	N	G	V	C	S	N	F	L	C	N	.	S	K	P	G	D	K	I	Q	L	T	G	P	S	G	K	I	M	L	L
Template Known Secondary structure		T	T	S	T	T		B								B		S		T	T	T	T	T	T	S	S	S												B		T	T	T			B		G	G	G	S									T	.			T	T											S	T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		448		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.						.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520
Predicted Secondary structure			.																																		.	.	.	.	.																																.
Query SS confidence			.																																		.	.	.	.	.																																.
Query Sequence		P	.	A	N	P	E	T	P	V	I	M	I	G	P	G	T	G	I	A	P	F	R	A	F	M	Q	Q	R	A	A	D	E	A	P	G	.	.	.	.	.	K	N	W	L	F	F	G	N	P	H	F	T	E	D	F	L	Y	Q	V	E	W	Q	R	Y	V	K	D	G	V	L	T	.	R	I	D	L	A	W	S	R
Query Conservation			.																																		.	.	.	.	.																																.
Alig confidence			.																																		.	.	.	.	.													.																			.
Template Conservation																																																						.
Template Sequence		P	E	E	D	P	N	A	T	H	I	M	I	A	T	G	T	G	V	A	P	F	R	G	Y	L	R	R	M	F	M	E	D	V	P	N	Y	R	F	G	G	L	A	W	L	F	L	G	V	A	N	S	D	.	S	L	L	Y	D	E	E	F	T	S	Y	L	K	Q	Y	P	D	N	F	R	Y	D	K	A	L	S	R
Template Known Secondary structure				S		T	T									G	G	G	G												T				T	T					S									S	S	G	G	.	G		S	S												T	T	T								T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	K	E	K	V	Y	V	Q	D	K	L	R	E	Q	G	A	E	L	W	R	W	I	N	D	G	A	H	I	Y	V	C	G	D	A	N	R	M	A	K	D	V	E	Q	A	L	L	E	V	I	A	E	F	G	G	M	D	T	E	A	A	D	E	F	L	S	E	L	R	V	E	R	R	Y	Q	R	D	V	Y
Query Conservation
Alig confidence																																				.																				.	.	.	.
Template Conservation																																				.																				.	.	.	.
Template Sequence		E	Q	K	G	K	M	Y	V	Q	D	K	I	E	E	Y	S	D	E	I	F	K	L	L	D	G	G	A	H	I	Y	F	C	G	L	.	K	G	M	M	P	G	I	Q	D	T	L	K	K	V	A	E	R	R	G	.	.	.	.	E	S	W	D	Q	K	L	A	Q	L	K	K	N	K	Q	W	H	V	E	V	Y
Template Known Secondary structure		T														T										T	T									.	G	G	G																T	.	.	.	.													T	T
Template Predicted Secondary structure																																				.																				.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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