Job Description P38038 Confidence 99.95% Date Thu Jan 5 11:57:50 GMT 2012 Rank 36 Aligned Residues 279 % Identity 17% Template c1gvhA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket Resolution 2.19 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	F	C	Q	S	G	K	D	F	D	S	K	L	A	E	L	G	G	E	R	L	L	D	R	V	D	A	D	V	E	Y	Q	A	A	A	S	E	W	R	A	R	V	V	D	A	L	K	S	R	A	P	V	A	A	P	S	Q	S	V	A	T	G	A	V	N	E	I	H	T	S	P	Y	S	K	D	A	P	L	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		E	Q	Y	N	I	V	G	E	H	L	L	A	T	L	D	E	M	F	S	.	.	.	.	.	.	.	.	.	.	.	P	G	Q	E	V	L	D	A	W	G	K	A	Y	G	V	L	A	N	V	F	I	.	.	.	.	.	.	.	N	R	E	A	E	I	Y	N	E	N	A	S	K	A	G	G	W	E	G	T	R	D
Template Known Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.													S	T	T			S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.												.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		A	S	L	S	V	N	Q	K	I	T	G	R	N	S	E	K	D	V	R	H	I	E	I	D	L	G	D	S	G	.	.	M	R	Y	Q	P	G	D	A	L	G	V	W	Y	Q	N	D	P	A	L	V	K	E	L	V	E	L	L	W	L	K	G	D	E	P	V	T	V	E	G	K	T	L	P	L	N	E	A	L	Q
Query Conservation																															.	.
Alig confidence													.	.	.	.	.														.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	I	V	A	K	T	P	R	S	A	.	.	.	.	.	L	I	T	S	F	E	L	E	P	V	D	G	G	A	V	A	E	Y	R	P	G	Q	Y	L	G	V	W	L	K	P	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S	.	.	.	.	.	S									T	T									T	T										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	F	E	L	T	V	N	T	A	N	I	V	E	N	Y	A	T	L	T	R	S	E	T	L	L	P	L	V	G	D	K	A	K	L	Q	H	Y	A	A	T	T	P	I	V	D	M	V	R	F	S	P	A	Q	L	D	A	E	A	L	I	N	L	L	R	P	L	T	P	R	L	Y	S	I	A	S	S	Q	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	H	Q	E	I	R	Q	Y	S	L	T	R	K	P	D	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S										S				.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
																																																																	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	E	V	H	V	T	V	G	V	V	R	Y	D	V	E	G	R	A	R	A	G	G	A	S	S	F	L	A	D	R	V	E	E	E	G	E	V	R	V	F	I	E	H	N	D	N	F	R	L	P	A	N	P	E	T	P	V	I	M	I	G	P	G	T	G	I	A	P	F	R	A	F	M	Q	Q	R	A	A
Query Conservation
Alig confidence		.													.	.	.	.	.	.	.	.																							.
Template Conservation		.													.	.	.	.	.	.	.	.																							.
Template Sequence		.	G	K	G	Y	R	I	A	V	K	R	E	E	.	.	.	.	.	.	.	.	G	G	Q	V	S	N	W	L	H	N	H	A	N	V	G	D	V	V	K	L	V	A	.	P	A	G	D	F	F	M	A	V	A	D	D	T	P	V	T	L	I	S	A	G	V	G	Q	T	P	M	L	A	M	L	D	T	L	A	K
Template Known Secondary structure		.	S	S										T	.	.	.	.	.	.	.	.	T										T			T	T								.				S							T	T									G	G	G	G
Template Predicted Secondary structure		.													.	.	.	.	.	.	.	.																							.
Template SS confidence
			214	.	.	.	.	.	220	.	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.					.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		D	E	A	P	G	K	N	W	L	F	F	G	N	P	H	F	T	E	D	F	L	Y	Q	V	E	W	Q	R	Y	V	K	D	G	V	L	T	R	I	D	L	A	W	S	R	D	Q	K	.	.	.	.	E	K	V	Y	V	Q	D	K	L	R	E	Q	G	A	E	L	W	R	W	I	N	D	G	A	H	I	Y	V	C
Query Conservation																																																	.	.	.	.
Alig confidence																			.																														.	.	.	.
Template Conservation																			.
Template Sequence		A	G	H	T	A	Q	V	N	W	F	H	A	A	E	N	G	D	.	V	H	A	F	A	D	E	V	K	E	L	G	Q	S	L	P	R	F	T	A	H	T	W	Y	R	Q	P	S	E	A	D	R	A	K	G	Q	F	D	S	E	G	L	M	D	L	S	K	L	E	G	A	F	S	D	P	T	M	Q	F	Y	L	C
Template Known Secondary structure			T			S									S		T	T	.	T			S										T	S	S	S								S	S									T			S			S	S			G	G	G	S	S	S					T	T
Template Predicted Secondary structure																			.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	A	N	R	M	A	K	D	V	E	Q	A	L	L	E
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		G	P	.	V	G	F	M	Q	F	T	A	K	Q	L	V	D
Template Known Secondary structure		S		.
Template Predicted Secondary structure				.
Template SS confidence
		363	.		.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions