Job Description P38038 Confidence 100.00% Date Thu Jan 5 11:57:50 GMT 2012 Rank 7 Aligned Residues 368 % Identity 35% Template c1f20A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution. Resolution 1.90 Å

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		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																					.																																										.	.	.
Query SS confidence																																					.																																										.	.	.
Query Sequence		P	Y	S	K	D	A	P	L	V	A	S	L	S	V	N	Q	K	I	T	G	R	N	S	E	K	D	V	R	H	I	E	I	D	L	G	.	D	S	G	M	R	Y	Q	P	G	D	A	L	G	V	W	Y	Q	N	D	P	A	L	V	K	E	L	V	E	L	L	W	L	K	G	D	E	P	V	T	V	E	.	.	.
Query Conservation																																					.																																										.	.	.
Alig confidence																																					.																																										.	.	.
Template Conservation
Template Sequence		N	V	H	K	K	R	V	S	A	A	R	L	L	S	R	Q	N	L	Q	S	P	K	S	S	R	S	T	I	F	V	R	L	H	T	N	G	N	Q	E	L	Q	Y	Q	P	G	D	H	L	G	V	F	P	G	N	H	E	D	L	V	N	A	L	I	E	R	L	E	D	A	P	P	A	N	H	V	V	K	V	E	M
Template Known Secondary structure					T	S														S		T	T		S	S										T	T		G	G	G				T	T																			T	T	B	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		986	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.
																					306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.	.	.	.																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.	.	.	.																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	T	L	P	L	N	E	A	L	Q	W	H	F	E	L	T	.	V	N	T	A	N	I	V	E	N	Y	A	T	L	T	R	S	.	.	.	.	E	T	L	L	P	L	V	G	D	K	A	K	L	Q	H	Y	A	A	.	.	T	T	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.	.	.	.																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.	.	.	.																			.	.
Template Conservation
Template Sequence		L	E	E	R	N	T	A	L	G	V	I	S	N	W	K	D	E	S	R	L	P	P	C	T	I	F	Q	A	F	K	Y	Y	L	D	I	T	T	P	P	T	P	L	Q	L	Q	Q	F	A	S	L	A	T	N	E	K	E	K	Q	R	L	L	V	L	S	K	G	L	Q	E	Y	E	E	W	K	W	G	K	N	P	T
Template Known Secondary structure						S	S	S	T	T										S	S		S	B									T	B			S	S												T	T	B													T	T		S
Template Predicted Secondary structure
Template SS confidence
		1066	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.
		360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.				.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure								.																																																	.	.	.
Query SS confidence								.																																																	.	.	.
Query Sequence		I	V	D	M	V	R	.	F	S	P	A	Q	L	D	A	E	A	L	I	N	L	L	R	P	L	T	P	R	L	Y	S	I	A	S	S	Q	A	E	V	E	N	E	V	H	V	T	V	G	V	V	R	Y	D	V	E	.	.	.	G	R	A	R	A	G	G	A	S	S	F	L	A	D	R	V	E	E	E	G	E	V
Query Conservation								.																																																	.	.	.
Alig confidence								.																																																	.	.	.															.
Template Conservation																																																																										.
Template Sequence		M	V	E	V	L	E	E	F	P	S	I	Q	M	P	A	T	L	L	L	T	Q	L	S	L	L	Q	P	R	Y	Y	S	I	S	S	S	P	D	M	Y	P	D	E	V	H	L	T	V	A	I	V	S	Y	H	T	R	D	G	E	G	P	V	H	H	G	V	C	S	S	W	L	N	R	.	I	Q	A	D	D	V	V
Template Known Secondary structure									S	T	T	B		B									S		B										S		T	T	T	S	T	T														G	G	G	T	S												T	T	.			T	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		1146	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.		.	.	1220	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.						.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		R	V	F	I	E	H	N	D	N	F	R	L	P	A	N	P	E	T	P	V	I	M	I	G	P	G	T	G	I	A	P	F	R	A	F	M	Q	Q	R	A	A	D	.	.	.	.	.	E	A	P	G	K	N	W	L	F	F	G	N	P	H	F	T	E	D	F	L	Y	Q	V	E	W	Q	R	Y	V	K	D	G	V
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.
Template Conservation
Template Sequence		P	C	F	V	R	G	A	P	S	F	H	L	P	R	N	P	Q	V	P	C	I	L	V	G	P	G	T	G	I	A	P	F	R	S	F	W	Q	Q	R	Q	F	D	I	Q	H	K	G	M	N	P	C	P	M	V	L	V	F	G	C	R	Q	S	K	I	D	H	I	Y	R	E	E	T	L	Q	A	K	N	K	G	V
Template Known Secondary structure									T	T	S	S			S		T	T	S								G	G	G	G																															S		T	T	T	S		T	T										T	T	S
Template Predicted Secondary structure
Template SS confidence
		1225	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.		.	.	.	.	.	530	.	.	.	.	.		.	.	.	.	540	.		.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure																.												.							.
Query SS confidence																.												.							.
Query Sequence		L	T	R	I	D	L	A	W	S	R	D	Q	K	E	.	K	V	Y	V	Q	D	K	L	R	E	Q	.	G	A	E	L	W	R	.	W	I	N	D	G	A	H	I	Y	V	C	G	D	A	N	R	M	A	K	D	V	E	Q	A	L	L	E	V	I	A	E	F	G	G	M	D	T	E	A	A	D	E	F	L	S	E
Query Conservation																.												.							.
Alig confidence																.												.							.															.
Template Conservation																																																		.
Template Sequence		F	R	E	L	Y	T	A	Y	S	R	E	P	D	R	P	K	K	Y	V	Q	D	V	L	Q	E	Q	L	A	E	S	V	Y	R	A	L	K	E	Q	G	G	H	I	Y	V	C	G	D	V	.	T	M	A	A	D	V	L	K	A	I	Q	R	I	M	T	Q	Q	G	K	L	S	E	E	D	A	G	V	F	I	S	R
Template Known Secondary structure										S	S		T	T	S													S										T	S											.																		T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		1305	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.		.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.
		588	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	E	R	R	Y	Q	R	D	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	D	D	N	R	Y	H	E	D	I	F
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		1384	.	.	.	.	.	1390	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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