Job Description P38038 Confidence 99.96% Date Thu Jan 5 11:57:50 GMT 2012 Rank 34 Aligned Residues 285 % Identity 20% Template c1cqxB_ PDB info PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution Resolution 1.75 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	F	C	Q	S	G	K	D	F	D	S	K	L	A	E	L	G	G	E	R	L	L	D	R	V	D	A	D	V	E	Y	Q	A	A	A	S	E	W	R	A	R	V	V	D	A	L	K	S	R	A	P	V	A	A	P	S	Q	S	V	A	T	G	A	V	N	E	I	H	T	S	P	Y	S	K	D	A	P	L	V
Query Conservation
Alig confidence																										.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	Y	P	I	V	G	E	H	L	L	A	A	I	K	E	V	L	G	N	A	A	T	D	.	.	D	I	I	S	A	W	A	Q	A	Y	G	N	L	A	D	V	L	M	G	M	E	S	E	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	S	A	E	Q	P	G	G	W	K	G	W	R	T
Template Known Secondary structure		G	G																	G	G	G				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	T	T			S	S
Template Predicted Secondary structure																										.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.															.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		A	S	L	S	V	N	Q	K	I	T	G	R	N	S	E	K	D	V	R	H	I	E	I	D	L	G	D	S	G	.	.	M	R	Y	Q	P	G	D	A	L	G	V	W	Y	Q	N	D	P	A	L	V	K	E	L	V	E	L	L	W	L	K	G	D	E	P	V	T	V	E	G	K	T	L	P	L	N	E	A	L	Q
Query Conservation																															.	.
Alig confidence													.	.	.	.	.														.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	I	R	E	K	R	P	E	S	D	.	.	.	.	.	V	I	T	S	F	I	L	E	P	A	D	G	G	P	V	V	N	F	E	P	G	Q	Y	T	S	V	A	I	D	V	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S	.	.	.	.	.	S									T	T									T	T										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	F	E	L	T	V	N	T	A	N	I	V	E	N	Y	A	T	L	T	R	S	E	T	L	L	P	L	V	G	D	K	A	K	L	Q	H	Y	A	A	T	T	P	I	V	D	M	V	R	F	S	P	A	Q	L	D	A	E	A	L	I	N	L	L	R	P	L	T	P	R	L	Y	S	I	A	S	S	Q	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	L	Q	Q	I	R	Q	Y	S	L	S	D	M	P	N	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											S				.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
																																																																	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	E	V	H	V	T	V	G	V	V	R	Y	D	V	E	G	R	A	R	A	G	G	A	S	S	F	L	A	D	R	V	E	E	E	G	E	V	R	V	F	I	E	H	N	D	N	F	R	L	P	A	N	P	E	T	P	V	I	M	I	G	P	G	T	G	I	A	P	F	R	A	F	M	Q	Q	R	A	A
Query Conservation
Alig confidence		.									.	.	.																																.
Template Conservation		.									.	.	.																																.
Template Sequence		.	G	R	T	Y	R	I	S	V	.	.	.	K	R	E	G	G	G	P	Q	P	P	G	Y	V	S	N	L	L	H	D	H	V	N	V	G	D	Q	V	K	L	A	A	.	P	Y	G	S	F	H	I	D	V	D	A	K	T	P	I	V	L	I	S	G	G	V	G	L	T	P	M	V	S	M	L	K	V	A	L	Q
Template Known Secondary structure		.	S	S							.	.	.				S		S	S	S															T	T								.		B		S		S			T	T			S							S	S														T
Template Predicted Secondary structure		.									.	.	.																																.
Template SS confidence
			216	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.				.	.	.	.	.	.	.	540	.	.	.		.	.	.	.	.	.	550	.	.
Predicted Secondary structure																																																										.	.	.												.
Query SS confidence																																																										.	.	.												.
Query Sequence		D	E	A	P	G	K	N	W	L	F	F	G	N	P	H	F	T	E	D	F	L	Y	Q	V	E	W	Q	R	Y	V	K	D	G	V	L	T	R	I	D	L	A	W	S	R	D	Q	K	E	K	V	Y	V	Q	D	K	L	.	.	.	R	E	Q	G	A	E	L	W	R	W	I	.	N	D	G	A	H	I	Y	V	C
Query Conservation																																																										.	.	.												.
Alig confidence						.													.																																							.	.	.												.
Template Conservation						.													.
Template Sequence		A	P	P	R	.	Q	V	V	F	V	H	G	A	R	N	S	A	.	V	H	A	M	R	D	R	L	R	E	A	A	K	T	Y	E	N	L	D	L	F	V	F	Y	D	Q	P	L	P	E	D	V	Q	G	R	D	Y	D	Y	P	G	L	V	D	V	K	Q	I	E	K	S	I	L	L	P	D	A	D	Y	Y	I	C
Template Known Secondary structure		S	S			.											T	T	.	S															T	T								S	S			T	T			B	T	T	T	B	S			S	S			T	T	T	S							T	T
Template Predicted Secondary structure						.													.
Template SS confidence
		291	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	A	N	R	M	A	K	D	V	E	Q	A	L	L	E
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		G	P	.	I	P	F	M	R	M	Q	H	D	A	L	K	N
Template Known Secondary structure		S	S	.													T
Template Predicted Secondary structure				.
Template SS confidence
		369	370		.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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