|   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | K | R | F | G | Q | N | F | L | N | D | Q | F | V | I | D | S | I | V | S | A | I | N | P | Q | K | G | Q | A | M | V | E | I | G | P | G | L | A | A | L | T | E | P | V | G | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | L | D | Q | L | T | V | I | E | L | D | R | D | L | A | A | R | L | Q | T |
Query Conservation |   |
|
|   |   |
|
|
|
|
|   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|   |
|
|   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   | . |   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
K | S | G | A | G | Q | . |
Y | F | T | P | R | P | L | I | Q | A | X | V | D | C | I | N | P | Q | X | G | E | T | V | C | D | P | A | C | G | T | G | G | F | L | L | T | A | Y | D | Y | X | K | G | Q | S | S | K | E | K | R | D | F | L | R | D | K | A | L | H | G | V | D | N | T | P | L | V | V | T | L | A | S | X |
Template Known Secondary structure |   |
T | T |
|
| G | G | . | G |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| T | T |
|
|  |  |  | T | T |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|  |  |  |  |  |  |  |  | T | T |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
146 | . | . | . | 150 | . | |
. | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
  |
  |   |
78 | . | 80 | . | . | . | |
|
|
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
| . | . | . | . |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | P | F | L | G | P | . |
. |
. |
. |
K | L | T | I | Y | Q | Q | D | A | M | T | F | N | F | G | E | L | A | E | K | M | G | Q | P | L | R | V | F | G | N | L | P | Y | N | I | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | P | L | M | F | H | L | F | S | Y | T | D | A | I |
Query Conservation |   |
  |   |   |   |   |   | . | . | . | . |   |   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |
|
|   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
N | L | Y | L | H | G | I | G | T | D | R | S | P | I | V | C | E | D | S | L | E | K | E | P | S | T | . |
. |
. |
. |
. |
. |
L | V | D | V | I | L | A | N | P | P | F | G | T | R | P | A | G | S | V | D | I | N | R | P | D | F | Y | V | E | T | K | N | N | Q | L | N | F | L | Q | H | X | X | L | X | L | K | T | G |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|
| S | S |
|
| S |  |  |  |
|
| T | T | T | S |
|
| S | S | . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|
| S | S |
|
|
| T | T |
|
|
|
|
|
| T | T | S | S | S |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
226 | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . |
  |
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | M | H | F | M | L | Q | K | E | V | V | N | R | L | V | A | G | P | N | S | K | A | Y | G | R | L | S | V | M | A | Q | Y | Y | C | N | V | I | P | V | L | E | V | P | P | S | A | F | T | P | P | P | K | V | D | S | A | V | V | R | L | V | P | H | A | T |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|
|   |
|   |
|
|   |
|   |
|
|   |
|   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |
|   |
|   |
|
|
|   |
|
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|   |
|   |   |   |
| . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |
|   |
|
|
|   |
|
|   |   |   |
|   |   | . |
|   |
|   |
|   |
|
|
|
|   |
|   |   |   |
Template Sequence |   |
G | R | A | A | V | V | L | P | D | N | V | L | . |
. |
. |
. |
. |
. |
F | E | A | G | A | G | E | T | I | R | K | R | L | L | Q | D | F | N | L | H | T | I | L | R | L | P | T | G | I | F | Y | A | . |
Q | G | V | K | A | N | V | L | F | F | S | K | G | Q | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
| S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S | S | S | S | S | S | . | T | T |
|
|  |  |  |  |  |  |  |  | S | S |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
300 | . | . | . | . | . | . | . | . | . | 310 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | |
. | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . |
  |