Job Description P06992 Confidence 100.00% Date Thu Jan 5 10:59:48 GMT 2012 Rank 1 Aligned Residues 253 % Identity 52% Template c3uzuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a; PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		K	R	F	G	Q	N	F	L	N	D	Q	F	V	I	D	S	I	V	S	A	I	N	P	Q	K	G	Q	A	M	V	E	I	G	P	G	L	A	A	L	T	E	P	V	G	E	R	.	.	.	.	L	D	Q	L	T	V	I	E	L	D	R	D	L	A	A	R	L	Q	T	H	P	F	L	G	P	K	L	T	I	Y
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.																						.	.
Template Conservation																																																																									.	.
Template Sequence		K	R	F	G	Q	N	F	L	V	D	H	G	V	I	D	A	I	V	A	A	I	R	P	E	R	G	E	R	M	V	E	I	G	P	G	L	G	A	L	T	G	P	V	I	A	R	L	A	T	P	G	S	P	L	H	A	V	E	L	D	R	D	L	I	G	R	L	E	Q	R	F	.	.	G	E	L	L	E	L	H
Template Known Secondary structure					S																					T	T									T	T	S	T	T										B	T	T	B																				.	.	G	G	G
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		Q	Q	D	A	M	T	F	N	F	G	E	L	A	E	K	M	G	Q	.	P	L	R	V	F	G	N	L	P	Y	N	I	S	T	P	L	M	F	H	L	F	S	Y	T	D	A	I	A	D	M	H	F	M	L	Q	K	E	V	V	N	R	L	V	A	G	P	N	S	K	A	Y	G	R	L	S	V	M	A	Q	Y	Y
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		A	G	D	A	L	T	F	D	F	G	S	I	A	R	P	G	D	E	P	S	L	R	I	I	G	N	L	P	Y	N	I	S	S	P	L	L	F	H	L	M	S	F	A	P	V	V	I	D	Q	H	F	M	L	Q	N	E	V	V	E	R	M	V	A	E	P	G	T	K	A	F	S	R	L	S	V	M	L	Q	Y	R
Template Known Secondary structure			S		G	G	G			G	G	G	G	S		S	S	S	S																						G	G	G	G	G	G																	T			T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	N	V	I	P	V	L	E	V	P	P	S	A	F	T	P	P	P	K	V	D	S	A	V	V	R	L	V	P	H	A	T	M	P	H	P	V	K	D	V	R	V	L	S	R	I	T	T	E	A	F	N	Q	R	R	K	T	I	R	N	S	L	G	N	L	F	S	V	E	V	L	T	G	M	G	I	D	P	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	M	D	K	L	I	D	V	P	P	E	S	F	Q	P	P	P	K	V	D	S	A	I	V	R	M	I	P	H	A	P	H	E	L	P	A	V	D	P	A	V	L	G	E	V	V	T	A	A	F	S	Q	R	R	K	M	L	R	N	T	L	G	G	Y	R	D	L	V	D	F	D	A	L	G	F	D	L	A	R
Template Known Secondary structure												G	G	G			S			S	S												G	G	G	S		S	S													G	G	G	T	T	S	B					T	G	G	G	T	T	T			T	T	T	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	E	N	I	S	V	A	Q	Y	C	Q	M	A	N	Y	L	A	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	E	D	I	G	V	D	E	Y	V	R	V	A	Q	A	V	A	S	A
Template Known Secondary structure		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions