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Job DescriptionP06992
Confidence99.50%DateThu Jan 5 10:59:48 GMT 2012
Rank20Aligned Residues183
% Identity14%Templatec3khkA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei.
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60 .........70....
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Query Sequence  RKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD. . . . . . . . . . . . . . . . . QLTVIELDRDLAAR
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Template Sequence  GKQGGQ. YYTPKSIVTLIVEMLEPYKG. RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL
Template Known Secondary structure  T

STT.T





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   220..... ....230.........240..... ....250.........260.........270.........280.........290.......
 
   75....80... ......90.........100.........110......... 120.
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Query Sequence  LQTHPFLGP. . . KLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TP
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Template Sequence  AAMNMVIRGIDFNFGKKNADSFLDDQHP. . . . DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNKRILTPPTGNANFA
Template Known Secondary structure  TT


B

SSS

TTTS
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T....T




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S


GGGTT
GGG







TT
T
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   298.300.........310.........320..... ....330.........340.........350.........360.........370...
 
   122.......130.........140.........150.........160.........170.........180.........190.........200.
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Query Sequence  LMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMP
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Template Sequence  WMLHMLYHLAPTGSMALLLANGSMSS. . . . . NTNNEGEIRKTLVEQDLVECMVALPGQLF. TNTQIPACIWFLTKDKNAK
Template Known Secondary structure  TT
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   376...380.........390.........400. ........410.........420.........430 .........440.........
 
   202....
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Query Sequence  HPVKD
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Template Sequence  NGKRD
Template Known Secondary structure  TTB

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   450....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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