Job Description P06992 Confidence 99.29% Date Thu Jan 5 10:59:48 GMT 2012 Rank 43 Aligned Residues 167 % Identity 16% Template c3bt7A_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase; PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue Resolution 2.43 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.
Predicted Secondary structure							.																																																																			.	.
Query SS confidence							.																																																																			.	.
Query Sequence		K	R	F	G	Q	.	N	F	L	N	D	Q	F	V	I	D	S	I	V	S	A	I	N	P	Q	K	G	Q	A	M	V	E	I	G	P	G	L	A	A	L	T	E	P	V	G	E	R	L	D	Q	L	T	V	I	E	L	D	R	D	L	A	A	R	L	Q	T	H	P	F	L	G	P	.	.	K	L	T	I	Y	Q
Query Conservation							.																																																																			.	.
Alig confidence							.																					.																																														.	.
Template Conservation																												.
Template Sequence		N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	.	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R
Template Known Secondary structure		T	S				S	B															T	T	T			.	S						S		T	T	S							G	G	G	S	S																						T	T			S
Template Predicted Secondary structure																												.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		90	.	.	.	.	.												.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	A	M	T	F	.	.	.	.	.	.	.	.	.	.	.	N	F	G	E	L	A	E	K	M	G	Q	P	L	R	V	F	G	N	L	P	Y	N	I	S	T	P	L	M	F	H	L	F	S	Y	T	D	A	I	A	D	M	H	F	M	L	Q	K	E	V	V	N	R	L	V	A	G	P	N	S	K	A	Y	G
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	S	E	T	E	K	M	V	.	.	Q	A	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S								S	S					T	T	G	G	G	S		G	G	G												T	T											.	.	T	T	S	S							S								.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	S	V	M	A	Q	Y	Y	C	N	V	I	P	V	L	E	V	P	P	S	A	F	T	P	P	P	K	V	D	S	A	V	V	R	L	V	P	H
Query Conservation
Alig confidence									.											.	.	.
Template Conservation									.											.	.	.
Template Sequence		N	L	E	T	L	S	Q	.	T	H	K	V	E	R	L	A	L	F	.	.	.	D	Q	F	P	Y	T	H	H	M	Q	C	G	V	L	L	T	A	K
Template Known Secondary structure									.											.	.	.			S	T	T	S	S
Template Predicted Secondary structure									.											.	.	.
Template SS confidence
		332	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions