Return to main results Retrieve Phyre Job Id

Job DescriptionP06992
Confidence87.93%DateThu Jan 5 10:59:48 GMT 2012
Rank336Aligned Residues50
% Identity16%Templatec2zkqm_
PDB info PDB header:ribosomal protein/rnaChain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
Resolution8.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   222.......230.... .....240.........250.........260.........270.
Predicted Secondary structure 



......
















Query SS confidence 












. . . . . .




































Query Sequence  RKTIRNSLGNLFS. . . . . . VEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQ
Query Conservation 

 
   
     ......   
    
    
   

      
           
Alig confidence 












......




































Template Conservation   
 
  

  
 


   
  

  


        

  

  
   
       
Template Sequence  RRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYK
Template Known Secondary structure  SSBGGGSTT

T

TTSBTTTS
TT
S

Template Predicted Secondary structure 
















Template SS confidence 























































   23......30.........40.........50.........60.........70........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions