Job Description P06992 Confidence 99.46% Date Thu Jan 5 10:59:48 GMT 2012 Rank 22 Aligned Residues 167 % Identity 11% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90
Predicted Secondary structure						.																																																																			.	.
Query SS confidence						.																																																																			.	.
Query Sequence		R	F	G	Q	.	N	F	L	N	D	Q	F	V	I	D	S	I	V	S	A	I	N	P	Q	K	G	Q	A	M	V	E	I	G	P	G	L	A	A	L	T	E	P	V	G	E	R	L	D	Q	L	T	V	I	E	L	D	R	D	L	A	A	R	L	Q	T	H	P	F	L	G	P	.	.	K	L	T	I	Y	Q	Q
Query Conservation						.																																																																			.	.
Alig confidence						.																																																																			.	.
Template Conservation
Template Sequence		D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E
Template Known Secondary structure		S				S	B																T			T	T							S		T	T	T	T	T						T	T	S	S							S															T	T			S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	M	T	F	N	F	G	E	L	A	E	K	M	G	Q	P	L	R	V	F	G	N	L	P	Y	N	I	S	T	P	L	M	F	H	L	F	S	Y	T	D	A	I	A	D	M	H	F	M	L	Q	K	E	V	V	N	R	L	V	A	G	P	N	S	K	A	Y	G	R	L	S	V	M	A	Q	Y	Y	C	N	V
Query Conservation
Alig confidence							.																																						.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																						.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	E	E	D	.	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	X	Q	Q	I	I	K	L	E	P	I	R	.	I	V	Y	V	S	C	N	P	A	T	L	A	R	.	.	.	.	.	.	.	.	.	.	.	D	S	E	A	L	L	K	A	G	Y	T	I
Template Known Secondary structure			T	T	S		.		S	S	S	G	G	G	T	T			S								T	T															S		.						S								.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure							.																																						.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		342	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.												.	.	.	400	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	V	L	E	V	P	P	S	A	F	T	P	P	P	K	V	D	S	A	V	V	R	L	V	P
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		A	R	L	A	X	L	.	.	.	D	X	F	P	H	T	G	H	L	E	S	X	V	L	F	S	R
Template Known Secondary structure								.	.	.			S	T	T	S	S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		409	410	.	.	.	.				.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions