Job Description P06992 Confidence 100.00% Date Thu Jan 5 10:59:48 GMT 2012 Rank 8 Aligned Residues 257 % Identity 14% Template c1i4wA_ PDB info PDB header:transcription Chain: A: PDB Molecule:mitochondrial replication protein mtf1; PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription Resolution 2.60 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																														.	.	.	.	.	.																							.	.
Query SS confidence																														.	.	.	.	.	.																							.	.
Query Sequence		H	L	A	R	K	R	F	G	Q	N	F	L	N	D	Q	F	V	I	D	S	I	V	S	A	I	N	P	Q	.	.	.	.	.	.	K	G	Q	A	M	V	E	I	G	P	G	L	A	A	L	T	E	P	V	G	E	R	.	.	L	D	Q	L	T	V	I	E	L	D	R	D	L	A	A	R	L	Q	T	H	P	F
Query Conservation																														.	.	.	.	.	.																							.	.
Alig confidence																														.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		S	K	L	K	F	F	Y	G	F	K	Y	L	W	N	P	T	V	Y	N	K	I	F	D	K	L	D	L	T	K	T	Y	K	H	P	E	E	L	K	V	L	D	L	Y	P	G	V	G	I	Q	S	A	I	F	Y	N	K	Y	C	P	R	Q	Y	S	L	L	E	K	R	S	S	L	Y	K	F	L	N	A	K	F	E
Template Known Secondary structure			S	S			G	G	G				B															G	G	G	T				T	T	T							S		T	T														S																			T	T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.															.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		L	G	P	K	L	T	I	Y	Q	Q	D	A	M	T	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	E	L	A	E	K	M	G	Q	P	L	R	V	F	G	N	L	P	Y	N	I	S	T	P	L	M	F	H	L	F	S	.	.	.	.	.	.	.	.	Y	T	D	A	I	A	D	M	H	F
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	G	S	P	L	Q	I	L	K	R	D	P	Y	D	W	S	T	Y	S	N	L	I	D	E	E	R	I	F	V	P	E	V	Q	S	S	D	H	I	N	D	K	F	L	T	V	A	N	V	T	G	E	G	S	E	G	L	I	M	Q	W	L	S	C	I	G	N	K	N	W	L	Y	R	F	G	K	V	K	M	L	L
Template Known Secondary structure		.	T	S	S						S		T	T									T	T	T	T		S	S							T	T	S													S	T	T															T		G	G	G	G	G	S
Template Predicted Secondary structure		.
Template SS confidence
			92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	Q	K	E	V	V	N	R	L	V	A	G	P	N	S	K	A	Y	G	R	L	S	V	M	A	Q	Y	Y	C	N	V	I	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	V	P	P	S	A	F	T	P	P	P	K	V	D	S	A	V	V	R	L	V	P	H
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	M	P	S	T	T	A	R	K	L	L	A	R	P	G	M	H	S	R	S	K	C	S	V	V	R	E	A	F	T	D	T	K	L	I	A	I	S	D	A	N	E	L	K	G	F	D	S	Q	C	I	E	E	W	D	P	I	L	F	S	A	A	E	I	W	P	T	K	G	K	P	I	A	L	V	E	M	D	P	I
Template Known Secondary structure															T	T	S	T	T																				S		G	G	G	G	G	G	S															G	G	G	B	S	S		S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																							.	.														.	.	.
Query SS confidence																																							.	.														.	.	.
Query Sequence		A	T	M	P	H	P	V	K	D	V	R	V	L	S	R	I	T	T	E	A	F	N	Q	R	R	K	T	I	R	N	S	L	G	N	L	F	S	.	.	V	E	V	L	T	G	M	G	I	D	P	A	M	.	.	.	R	A	E	N	I	S	V	A	Q	Y	C	Q	M	A	N	Y	L	A	E	N	A	P	L	Q
Query Conservation																																							.	.														.	.	.
Alig confidence				.	.	.	.																																.	.														.	.	.																		.
Template Conservation				.	.	.	.																																																																			.
Template Sequence		D	F	.	.	.	.	D	F	D	V	D	N	W	D	Y	V	T	R	H	L	M	I	L	K	R	T	P	L	N	T	V	M	D	S	L	G	H	G	G	Q	Q	Y	F	N	S	R	I	T	D	K	D	L	L	K	K	C	P	I	D	L	T	N	D	E	F	I	Y	L	T	K	L	F	.	M	E	W	P	F	K
Template Known Secondary structure				.	.	.	.		S														T	T	T	T	S		T	T	T	G	G	G	G	S	S	T	T						T	T	T					T	T	T	S	S		G	G	G														.		T		S	S
Template Predicted Secondary structure				.	.	.	.																																																																			.
Template SS confidence
		251	.					.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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