Job Description P31455 Confidence 99.83% Date Thu Jan 5 11:47:46 GMT 2012 Rank 49 Aligned Residues 327 % Identity 12% Template d2madh_ SCOP info 7-bladed beta-propeller YVTN repeat-like/Quinoprotein amine dehydrogenase Methylamine dehydrogenase, H-chain Resolution UNK

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																							.	.																																			.	.	.																.	.	.	.	.
Template Conservation																							.	.																																			.	.	.
Template Sequence		A	G	A	A	D	G	P	T	N	D	E	A	P	G	A	D	G	R	R	S	Y	.	.	I	N	L	P	A	H	H	S	A	I	I	Q	Q	W	V	L	D	A	G	S	G	S	I	L	G	H	V	N	G	G	F	L	P	N	.	.	.	P	V	A	A	H	S	G	S	E	F	A	L	A	S	T	S	F	S	R	I
Template Known Secondary structure		T	T															T	T				.	.					G	G	G		S									T	T	T	T										S	S			.	.	.					T	T	S	S										T	T	S
Template Predicted Secondary structure																							.	.																																			.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
						93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																														.	.
Query SS confidence		.	.	.	.																																																														.	.
Query Sequence		.	.	.	.	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	.	.	Y	N	D	H	V	M	H	E	L	D	P	A	L
Query Conservation		.	.	.	.																																																														.	.
Alig confidence		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	G	K	R	T	D	Y	V	E	V	F	D	P	V	T	F	L	P	I	A	D	I	E	L	P	D	A	P	R	F	D	V	G	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	M	N	A	N	T	P	N	N	A	D	L	L	F	F	Q	F	A	A	G	P	A	V	G	L	V	V	Q	G	G
Template Known Secondary structure		S	S	S											T	T	T				S						T	T						S				.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S				T	T	S	S	B							S	S	S							B	T	T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.														.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	.	.	.	.	.	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V
Query Conservation																																																												.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.
Template Sequence		S	S	D	D	Q	L	L	S	S	P	T	C	Y	H	.	.	.	.	.	.	.	.	.	I	H	P	G	A	P	S	T	F	Y	L	L	C	A	Q	G	G	L	A	K	T	D	H	A	G	G	A	A	G	A	G	L	V	G	A	M	L	T	A	A	Q	N	L	L	T	Q	P	A	Q	A	N	K	S	G	R	I	V
Template Known Secondary structure		T	B									S			S	.	.	.	.	.	.	.	.	.					B	T	T							S	S	S									T	T											S		T	T	S				S						T	T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.										.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.																													.	.
Query SS confidence																																																		.	.																													.	.
Query Sequence		P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	.	.	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	.	.
Query Conservation																																																		.	.																													.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																													.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	Y	S	G	K	I	L	Q	A	D	I	S	A	A	G	A	T	N	K	A	P	I	D	A	L	S	G	G	R	K	A	D	T	W	R	P	G	G	W	Q	Q	V	A	Y	L	K	S	S	D	G	I	Y	L	L	T	S	E	Q	S
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S									T	T										S	S							T	T					S	S	S						T	T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229																				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
						318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.				.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure		.	.	.	.																																													.	.	.
Query SS confidence		.	.	.	.																																													.	.	.
Query Sequence		.	.	.	.	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A
Query Conservation		.	.	.	.																																													.	.	.
Alig confidence		.	.	.	.																						.																							.	.	.
Template Conservation																											.
Template Sequence		A	W	K	L	H	A	A	A	K	E	V	T	S	V	T	G	L	V	G	Q	T	S	S	Q	I	.	S	L	G	H	D	V	D	A	I	S	V	A	Q	D	G	G	P	D	L	Y	A	L	S	A	G	T	E	V	L	H	I	Y	D	A	G	A	G	D	Q	D	Q	S	T	V	E	L	G	S	G	P	Q	V	L	S
Template Known Secondary structure		T	T		T	T	S										T	T	T								.													S	S	S	S								T	T	T	T							T	T	T												S	S
Template Predicted Secondary structure																											.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		391
Predicted Secondary structure
Query SS confidence
Query Sequence		V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		369

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions