Job Description P31455 Confidence 99.91% Date Thu Jan 5 11:47:46 GMT 2012 Rank 20 Aligned Residues 363 % Identity 10% Template d1qksa2 SCOP info 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Resolution 1.28

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N
Query Conservation
Alig confidence																																	.	.	.	.	.																				.	.																				.
Template Conservation																																	.	.	.	.	.																				.	.																				.
Template Sequence		K	V	H	V	A	P	E	D	R	P	T	Q	Q	M	N	D	W	D	L	E	N	L	F	S	V	T	L	R	D	A	G	.	.	.	.	.	Q	I	A	L	I	D	G	S	T	Y	E	I	K	T	V	L	D	T	G	.	.	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	.	R	D	G
Template Known Secondary structure				S	S		G	G	G	S		S	S			S				G	G	G							T	T	T	T	.	.	.	.	.							T	T	T										S	.	.	S									T	T	S								.	T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.																				.	.																				.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	.	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A
Query Conservation																																																													.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S
Template Known Secondary structure								T	T	S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S										S	T	T		T	T	T									T	T							T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.																.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																																																								.	.	.
Query SS confidence																		.	.	.	.	.	.																																																								.	.	.
Query Sequence		A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	.	.	.	.	.	.	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	.	.	.
Query Conservation																		.	.	.	.	.	.																																																								.	.	.
Alig confidence																		.	.	.	.	.	.																																																								.	.	.
Template Conservation
Template Sequence		T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	N	N	L	K	T	T	E	I	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R
Template Known Secondary structure							T	T	T					S											S	S	S	S							T	T	T	T							T	T		S	S	S										S	S								T	T	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
			246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.															.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.											.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Query Sequence		.	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	.	.	.	.	.	.	.	.	.	.	R	A	Y	P	G	L	V	N	V	P	R	H
Query Conservation		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Alig confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S	H	M	G	D	D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G	G	G	S	L
Template Known Secondary structure		T							T	T	T	T									S	S	S	S	B			T	T							T	T	T								B	S	S	S	S									T	T	T		T	T	T	B	T	S								S		S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340															.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																						.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																						.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	.	.	.	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	.	.	.
Query Conservation																						.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence																						.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		F	I	K	T	H	P	N	S	Q	Y	L	Y	V	D	A	T	L	N	P	E	A	E	I	S	G	S	V	A	V	F	D	I	K	A	M	T	G	D	G	S	D	P	E	F	K	T	L	P	I	A	E	W	A	G	I	T	E	G	Q	P	R	V	V	Q	G	E	F	N	K	D	G	T	E	V	W	F	S	V	W	N
Template Known Secondary structure							T	T		S							T	T		S	S					T							G	G	G				S	S	S														T			S	S											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
					361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	G	Q	L	W
Query Conservation		.	.	.
Alig confidence		.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		G	K	D	Q	E	S	A	L	V	V	V	D	D	K	T	L	E	L	K	H	V	I	K	D	E	R	.	.	.	.	.	.	.	.	L	V	T	P	T	G	K	F	N	V	Y	N	T	M	T	D	T	Y
Template Known Secondary structure			T	T	S									T	T	T	T									T	T	.	.	.	.	.	.	.	.			S												T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.									550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.