Job Description P31455 Confidence 99.77% Date Thu Jan 5 11:47:46 GMT 2012 Rank 71 Aligned Residues 306 % Identity 12% Template c4a11B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex Resolution 3.31 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.													.	70	.	.
Predicted Secondary structure																													.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	Q	D	R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	.	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	A	S	Q	G
Query Conservation																													.																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.													.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.
Template Sequence		V	L	G	L	E	L	N	K	D	R	D	V	E	R	I	H	G	G	G	I	N	T	L	D	I	E	P	V	E	G	R	Y	M	L	S	G	G	S	D	G	.	.	.	.	.	.	.	V	I	V	L	Y	D	L	E	N	S	S	R	Q	S	Y	Y	T	C	K	A	V	C	S	I	G	R	D	H	P	D	V	H	R
Template Known Secondary structure				T					T	T								S	S									T	T	T									T	T	S	.	.	.	.	.	.	.											S	S	S	S												T	T		T	T			S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	V	E	T	V	Q	W	Y	P	H	D	T	G	M	F	T	S	S	S	F	D	K	T	L	K	V	W	D	T	N	T	L	Q	T	A	D	V	F	N	F	E	E	T	V	Y	S	H	H	M	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	T	K	H	C	L	V	A	V
Template Known Secondary structure		S									T	T		T	T							T	T	S							T	T	T	T									S	S									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																			.	.	.	.	.	.	.	.	160	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		G	T	R	G	P	K	V	Q	L	C	D	L	K	S	G	S	C	S	H	I	L	Q	G	H	R	Q	E	I	L	A	V	S	W	S	P	R	Y	D	.	.	.	.	.	Y	I	L	A	T	A	S	A	D	S	R	V	K	L	W	D	V	R	R	A	S	G	C	L	I	T	L	D	Q	H	N	G	K	K	S	Q	A
Template Known Secondary structure				S	S	S	S						S	S	S	S											S									S	S		T	.	.	.	.	.	T							T	T	S							T	T		S	S			S					T	T	T	T		S
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
						222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.	.	.																									.	.	.
Query SS confidence		.	.	.	.																									.	.	.
Query Sequence		.	.	.	.	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	.	.	.	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L
Query Conservation		.	.	.	.																									.	.	.
Alig confidence		.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	S	A	N	T	A	H	N	G	K	V	N	G	L	C	F	T	S	D	G	L	H	L	L	T	V	G	T	D	N	R	M	R	L	W	N	S	S	N	G	E	N	T	L	V	N	Y	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	N	N
Template Known Secondary structure		T	T	T	S	S		S		S	S									T	T	S	S							T	T	S							T	T	T			B									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																											.	.	290
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q
Query Conservation																																																																					.
Alig confidence																											.	.	.	.																																							.
Template Conservation																											.	.	.	.
Template Sequence		S	K	K	G	L	K	F	T	V	S	C	G	C	S	S	E	F	V	F	V	P	Y	G	S	T	.	.	.	.	I	A	V	Y	T	V	Y	S	G	E	Q	I	T	M	L	K	G	H	Y	K	T	V	D	C	C	V	F	Q	S	N	F	Q	E	L	Y	S	G	S	R	D	C	N	I	L	A	W	V	P	S
Template Known Secondary structure			S	S									S	S	S	S								T	T		.	.	.	.						T	T	T											S	S									T	T	T	T							T	T	S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions