Job Description P31455 Confidence 51.35% Date Thu Jan 5 11:47:46 GMT 2012 Rank 177 Aligned Residues 226 % Identity 11% Template c3soqA_ PDB info PDB header:protein binding/antagonist Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide Resolution 1.90 Å

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		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		L	L	L	Y	A	N	R	R	D	L	R	L	V	D	A	T	N	G	K	E	N	A	T	I	V	V	G	G	L	E	D	A	A	A	V	D	F	V	F	S	H	G	.	.	.	.	.	L	I	Y	W	S	D	V	S	E	E	A	I	K	R	T	E	F	N	K	T	E	S	V	Q	N	V	V	V	S	G	L	L	S
Template Known Secondary structure																G	G	G	T	T	S																			G	G	G	T	.	.	.	.	.							T	T	T	T							T	T	S	T	T											S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		P	D	G	L	A	C	D	W	L	G	E	K	L	Y	W	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R	K	V	L	.	.	.	.	.	.	.	.	F	W	Q	E	L	D	Q	P	R	A	I	A	L	D	P	S	S
Template Known Secondary structure									T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T							T	T	S		S					.	.	.	.	.	.	.	.			S	S		S	S								T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P
Query Conservation																																																							.	.
Alig confidence									.	.																																													.	.
Template Conservation									.	.
Template Sequence		G	F	M	Y	W	T	D	.	.	W	G	E	V	P	K	I	E	R	A	G	M	D	G	S	S	R	F	I	I	I	N	S	E	I	Y	W	P	N	G	L	T	L	D	Y	E	E	Q	K	L	Y	W	A	D	A	K	L	N	F	I	H	K	S	N	L	D	G	T	N	R	Q	A	V	V	K	G	S	L	P	H	P
Template Known Secondary structure		T							.	.		S	S	S								T	T	S		S							S	S		S									T	T	T	T							T	T	T	T							T	T	S		S							S			S
Template Predicted Secondary structure									.	.
Template SS confidence
		150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	.	.	E	G	G	Q	L	W	I	T	E
Query Conservation																			.	.
Alig confidence							.	.	.	.									.	.
Template Conservation							.	.	.	.
Template Sequence		F	A	L	T	L	.	.	.	.	F	E	D	I	L	Y	W	T	D	W	S	T	H	S	I	L	A	C	N
Template Known Secondary structure							.	.	.	.		T	T							T	T	T	T
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		228	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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