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Job DescriptionP31455
Confidence51.35%DateThu Jan 5 11:47:46 GMT 2012
Rank177Aligned Residues226
% Identity11%Templatec3soqA_
PDB info PDB header:protein binding/antagonistChain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   149150.........160.........170.........180.........190.........200.........210.........220........
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Query Sequence  RVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALA
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Template Sequence  LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG. . . . . LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS
Template Known Secondary structure 
GGGTTS

GGGT.....TTTTTTSTT




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   22.......30.........40.........50.........60... ......70.........80.........90......
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  FIGDTLSPKGEKVPELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQG
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Template Sequence  PDGLACDWLGEKLYWTD. . . . . . . . . . . . . . . . . . . SETNRIEVSNLDGSLRKVL. . . . . . . . FWQELDQPRAIALDPSS
Template Known Secondary structure 

TTTT...................TTTTTTS
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   97..100.........110... ......120.........130.. .......140.........
 
   309310.........320.........330.........340.........350.........360. ........370.........380......
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Query Sequence  TQIAFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVL. . DNRIACAHAQSGEVEYLTEHHANSP
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Template Sequence  GFMYWTD. . WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP
Template Known Secondary structure  T..
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   150...... ...160.........170.........180.........190.........200.........210.........220.......
 
   387..390.........400... ......410..
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Query Sequence  SADAVVFSPDGQWLAWM. . EGGQLWITE
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Template Sequence  FALTL. . . . FEDILYWTDWSTHSILACN
Template Known Secondary structure  ....TTTTTT
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   228.230.. .......240.........250.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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