Job Description P31455 Confidence 99.97% Date Thu Jan 5 11:47:46 GMT 2012 Rank 4 Aligned Residues 336 % Identity 13% Template c3pe7A_ PDB info PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese Resolution 1.65 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.						.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence		G	P	V	L	Y	Q	D	R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	.	.	.	.	.	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V
Query Conservation																											.	.	.	.	.
Alig confidence																											.	.	.	.	.																					.	.	.	.																			.
Template Conservation																																																				.	.	.	.																			.
Template Sequence		F	D	T	Y	Q	D	A	S	T	G	A	Q	V	T	R	L	T	P	P	D	V	T	C	H	R	N	Y	F	Y	Q	K	C	F	T	R	D	G	S	K	L	L	F	G	G	A	F	D	G	P	W	.	.	.	.	N	Y	Y	L	L	D	L	N	T	Q	V	A	T	Q	L	T	E	G	.	R	G	D	N	T	F	G
Template Known Secondary structure								T	T	T								S		T	T	S							T	T	S			B		T	T	S									T	T	S	S		.	.	.	.							T	T	T									S	.	S		B		S	S	S
Template Predicted Secondary structure																																																				.	.	.	.																			.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	L	S	P	D	D	D	A	L	F	Y	V	K	D	G	R	N	L	M	R	V	D	L	A	T	L	E	E	N	V	V	Y	Q	V	P	A	E	W	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	R	R
Template Known Secondary structure						T	T	S	S							T	T	T							T	T	T											T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S									G
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	W	V	P	L	T	D	W	K	K	F	H	E	F	Y	F	T	K	P	C	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	M	R	V	D	L	K	T	G	E	S	T	V	I	L	Q	E	N	Q	W	L	G	H	P	I	Y	R	P	Y
Template Known Secondary structure		G	G						S								G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T										S	S									T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																													.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		D	D	S	T	V	A	F	C	H	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	D	L	V	D	A	R	M	W	L	I	N	E	D	G	T	N	M	R	K	V	K	T	H	A	.	.	.	.	.	.	.	E	G	E	S	C	T	H	E	F	W	V	P	D	G	S	A	L	V	Y	V	S	Y	L
Template Known Secondary structure												S	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	S	S		S						T	T	S						S					.	.	.	.	.	.	.	T	T										T	T	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.														210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.								.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		318	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.									.
Predicted Secondary structure						.																																									.	.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence						.																																									.	.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		D	N	G	I	.	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	.	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	.	.	.	.	.	.	.	.	A
Query Conservation						.																																									.	.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence						.																		.	.																						.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		K	G	S	P	D	R	F	I	Y	S	A	D	P	E	T	L	E	N	R	Q	L	T	.	.	S	M	P	A	C	S	H	L	M	S	N	Y	D	G	S	L	M	V	G	D	G	S	D	A	E	N	D	P	F	L	Y	V	F	N	M	K	N	G	T	Q	H	R	V	A	R	H	D	T	S	W	K	V	F	E	G	D
Template Known Secondary structure		T	T											T	T	T								.	.												T	T	S	S																				T	T	T	T															B	T	T	B
Template Predicted Secondary structure																								.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	.	.	.	.	G	Q	L	W	I	T	E
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.
Template Conservation
Template Sequence		R	Q	V	T	H	P	H	P	S	F	T	P	D	D	K	Q	I	L	F	T	S	D	V	H	G	K	P	A	L	Y	L	A	T
Template Known Secondary structure		S	S	T	T								T	T	S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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