Job Description P31455 Confidence 95.00% Date Thu Jan 5 11:47:46 GMT 2012 Rank 162 Aligned Residues 112 % Identity 18% Template c3pbpD_ PDB info PDB header:transport protein,structural protein Chain: D: PDB Molecule:nucleoporin nup82; PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex Resolution 2.60 Å

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		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																														.	.																																	.	.
Query SS confidence																																														.	.																																	.	.
Query Sequence		P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	.	.	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	N	R	I	A	C	A	H	A	Q	S	G	.	.
Query Conservation																																														.	.																																	.	.
Alig confidence																				.	.	.																								.	.																																	.	.
Template Conservation																				.	.	.
Template Sequence		A	P	R	Y	I	F	S	S	Q	N	G	T	R	I	V	F	I	Q	.	.	.	D	N	I	I	R	W	Y	N	V	L	T	D	S	L	Y	H	S	L	N	F	S	R	H	L	V	L	D	D	T	F	H	V	I	S	S	T	S	G	D	L	L	C	L	F	N	D	N	E	I	F	V	X	E	V	P	W	G	Y	S
Template Known Secondary structure										T	T	T	T							.	.	.	T	T							T	T	T		S	S							T	T	T					T	T							T	T	S	S							S	S									T	T		S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
													374	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.															.									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.															.									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	.	A	D	A	V	V	F	S	P	.	.	.	.	D	G	Q	W	L	A	W	M	E	G	G	Q	L	W	I	T	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.															.									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.															.									.	.	.	.
Template Conservation
Template Sequence		N	V	E	D	V	S	I	Q	D	A	F	Q	I	F	H	Y	S	I	D	E	E	E	P	K	S	S	I	K	K	V	L	F	H	P	K	S	Y	R	D	S	C	I	V	V	L	K	E	D	D	T	I	T	X	F	D
Template Known Secondary structure											T	T							G	G	G														T	T	B	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions