Job Description P31455 Confidence 99.77% Date Thu Jan 5 11:47:46 GMT 2012 Rank 68 Aligned Residues 327 % Identity 9% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																										.	.	.																													.
Query SS confidence																										.	.	.																													.
Query Sequence		R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	.	.	.	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	.	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E
Query Conservation																										.	.	.																													.
Alig confidence																										.	.	.												.	.	.	.	.	.	.											.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		N	P	M	K	D	I	E	V	T	S	S	P	D	D	S	I	G	C	L	S	F	S	P	P	T	L	P	G	N	F	L	I	A	G	S	W	A	N	.	.	.	.	.	.	.	D	V	R	C	W	E	V	Q	D	S	G	Q	T	I	P	K	A	Q	Q	M	H	T	G	P	V	L	D	V	C	W	S	D	D	G	S
Template Known Secondary structure			T	T						S	S			S	S										T	T	S	S	S								T	T	S	.	.	.	.	.	.	.									T	T	S											S	S									T	T	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A
Query Conservation
Alig confidence					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	F	.	T	A	S	C	D	K	T	A	K	M	W	D	L	S	S	N	Q	A	I	Q	I	A	Q	H	D	A	P	V	K	T	I	H	W	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	N	Y	S	C	V	M	T	G	S	W	D	K	T	L	K	F	W	D	T	R
Template Known Secondary structure					.				T	T	S							T	T	T	T									S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									T	T	S							S	S
Template Predicted Secondary structure					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		S	S	N	P	M	M	V	L	Q	L	P	E	R	C	Y	C	A	D	V	I	Y	P	.	.	.	.	.	.	.	.	M	A	V	V	A	T	A	E	R	G	L	I	V	Y	Q	L	E	N	Q	P	S	E	F	R	R	I	E	S	P	L	K	H	Q	H	R	C	V	A	I	F	K	D	K	.	.	.	.	.	.	.
Template Known Secondary structure			S	S		S						S	S									T	T	.	.	.	.	.	.	.	.							G	G	G								S	S	S										S		S	S											T	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W
Query Conservation
Alig confidence		.	.	.	.	.	.																																																																					.	.	.	.
Template Conservation		.	.	.	.	.	.																																																																					.	.	.	.
Template Sequence		.	.	.	.	.	.	Q	N	K	P	T	G	F	A	L	G	S	I	E	G	R	V	A	I	H	Y	I	N	P	P	N	P	A	K	D	N	F	T	F	K	C	H	R	S	N	S	A	P	Q	D	I	Y	A	V	N	G	I	A	F	H	P	V	H	G	T	L	A	T	V	G	S	D	G	R	.	.	.	.	F	S
Template Known Secondary structure		.	.	.	.	.	.	T	S										S	S	S							S	S		S						S						S																			T	T	T								T	T	S		.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																																																					.	.	.	.
Template SS confidence
								225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q	P	I	S	A	C	C	F	N	H	N	G	N	I	F	A	Y	A	S	S	Y	D	W	S	K	G	H	E	F	Y	N	P	Q	K	K	N	Y	I	F	L	R	N	A	A	E	E	L
Template Known Secondary structure					T	T	T	T										S	S									T	T	S	S										S	T	T		G	G	G			T	T	S										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions