Job Description P31455 Confidence 99.91% Date Thu Jan 5 11:47:46 GMT 2012 Rank 21 Aligned Residues 359 % Identity 9% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N
Query Conservation
Alig confidence																															.	.	.	.	.	.	.																		.																				.
Template Conservation																															.	.	.	.	.	.	.																		.																				.
Template Sequence		K	T	F	S	N	R	S	D	R	V	K	G	I	D	F	H	P	T	E	P	W	V	L	T	T	L	Y	S	G	.	.	.	.	.	.	.	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	.	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	I	.	V	G	S	D	D	F
Template Known Secondary structure									S									S	S	S	S							T	T	S	.	.	.	.	.	.	.							T	T	T	T								.			S	S									G	G	G	T				.				T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.																		.																				.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	.	A
Query Conservation																																																																																.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	R	V	F	N	Y	N	T	G	E	K	V	V	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	H	P	D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	S	G	S	D	D	L	T	V	K	L	W	N	W	E	N	N	W	A	L	E	Q	T	F	E
Template Known Secondary structure								T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S									S	S	S	S							T	T	S							G	G	G	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	.	.	.	.	.	I	V	E	L
Query Conservation																																																																									.	.	.	.	.
Alig confidence																		.	.	.	.	.																																																			.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		G	H	E	H	F	V	M	C	V	A	F	N	P	K	D	P	.	.	.	.	.	S	T	F	A	S	G	C	L	D	R	T	V	K	V	W	S	L	G	Q	S	T	P	N	F	T	L	T	T	G	Q	E	R	G	V	N	Y	V	D	Y	Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I
Template Known Secondary structure				S	S									T	T			.	.	.	.	.								T	T	S							T	T		S	S		S								T	T										S	T	T									T	T	S
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.									.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.																.	.	.
Query Sequence		P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	.	.	.	.	.	.	.	.	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	.	.	.	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D
Query Conservation																														.	.	.	.	.	.	.	.																.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		W	D	Y	Q	T	K	S	C	V	A	T	L	E	G	H	M	S	N	V	S	F	A	V	F	H	P	T	L	P	I	I	I	S	G	S	E	D	G	T	L	K	I	W	N	S	S	T	Y	K	V	E	K	T	L	N	V	G	L	E	R	S	W	C	I	A	T	H	P	T	G	R	K	N	Y	I	A	S	G	F	D
Template Known Secondary structure				T	T	T	T										S	S									S	S	S	S							T	T	S							T	T	T		S								S	S	S	S								T	T		G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G
Query Conservation																																													.
Alig confidence				.	.	.																																							.																	.
Template Conservation				.	.	.																																																								.
Template Sequence		N	G	.	.	.	F	T	V	L	S	L	G	N	D	E	P	T	L	S	L	D	P	V	G	K	L	V	W	S	G	G	K	N	A	A	A	S	D	I	F	T	A	V	I	R	G	N	E	E	V	E	Q	D	E	P	L	S	L	Q	T	.	K	E	L	G	S	V	D	V	F	P	Q	S	L	A	H	S	P	N	G
Template Known Secondary structure		T		.	.	.							S			S							S	S	S								T	T	S		T	T									S						S	S	S		B					.							S	S			S						T	T	S
Template Predicted Secondary structure				.	.	.																																																								.
Template SS confidence
		293	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	L	A	W	M	E	G	G	Q	L	W	I	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	V	T	V	V	G	D	G	E	Y	V	I	Y	T
Template Known Secondary structure		S							T	T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions