Job Description P31455 Confidence 99.67% Date Thu Jan 5 11:47:46 GMT 2012 Rank 96 Aligned Residues 235 % Identity 11% Template c3lrvA_ PDB info PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. Resolution 2.60 Å

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		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V
Query Conservation
Alig confidence																																																													.	.
Template Conservation																																																													.	.
Template Sequence		M	Y	Y	D	K	W	V	C	M	C	R	C	E	D	G	A	L	H	F	T	Q	L	K	D	S	K	T	I	T	T	I	T	T	P	N	P	R	T	G	G	E	H	P	A	I	I	S	R	G	P	C	N	R	L	L	L	L	Y	P	.	.	G	N	Q	I	T	I	L	D	S	K	T	N	K	V	L	R	E	I	E
Template Known Secondary structure		S	S												T	T								S	S	S	S												T	T					S						S	T	T							T	.	.	T	T							T	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	.	.	.	.	A	Y	P	G	L	V	N	V	P
Query Conservation																																																																					.	.	.	.
Alig confidence			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	.	D	S	A	N	E	I	I	Y	M	Y	G	H	N	T	E	Y	F	I	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	R	G	T	I	G	F	Q	S	Y	E	D	D	S	Q	Y	I	V	H	S	A	K	S	D	V	E
Template Known Secondary structure			.			S	S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								S	S	S	S										S	S
Template Predicted Secondary structure			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																																.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L
Query Conservation
Alig confidence																			.	.																																																											.	.
Template Conservation																			.	.																																																											.	.
Template Sequence		Y	S	S	G	V	L	H	K	D	S	L	L	L	A	L	Y	S	.	.	P	D	G	I	L	D	V	Y	N	L	S	S	P	D	Q	A	S	S	R	F	P	V	D	E	E	A	K	I	K	E	V	K	F	A	D	N	G	Y	W	M	V	V	E	C	D	Q	T	V	V	C	F	D	L	R	K	D	V	G	.	.	T
Template Known Secondary structure									T	T	S								.	.	T	T	S							S	S		T	T	S									T	T	S									T	T	S	S							S	S	B						T	T	S	S	T	T	.	.
Template Predicted Secondary structure																			.	.																																																											.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.			.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	.	.	G	Q	L	W	I	T	E	T	D	R
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		L	A	Y	P	T	Y	T	I	G	T	V	T	Y	D	I	D	D	S	G	K	N	M	I	A	Y	S	N	E	S	N	S	L	T	I	Y	K	F	D	K
Template Known Secondary structure		B	S	S				B										T	T	S	S							T	T	T	T									T
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions