Job Description P31455 Confidence 99.77% Date Thu Jan 5 11:47:46 GMT 2012 Rank 70 Aligned Residues 322 % Identity 11% Template c3iz6a_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	D	R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.																			.
Template Conservation																																								.	.	.	.	.	.	.																			.
Template Sequence		F	N	P	T	D	L	V	C	C	R	T	L	Q	G	H	S	G	K	V	Y	S	L	D	W	T	P	E	K	N	W	I	V	S	A	S	Q	D	G	.	.	.	.	.	.	.	R	L	I	V	W	N	A	L	T	S	Q	K	T	H	A	I	K	L	.	H	C	P	W	V	M	E	C	A	F	A	P	N	G	Q	S
Template Known Secondary structure																	S	S									T	T	S	S							T	T	S	.	.	.	.	.	.	.							T	T	T	T									.			T	T								T	T	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.																			.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L
Query Conservation
Alig confidence				.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	.	C	G	G	L	D	S	A	C	S	I	F	N	L	S	S	Q	A	D	R	D	G	N	M	P	V	S	R	V	L	T	G	H	K	G	Y	A	S	S	C	Q	Y	V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	T	R	L	I	T	G	S	G	D	Q	T	C	V	L	W	D	V	T	T
Template Known Secondary structure				.				S	S	S											S	S				S	S	T	T			B					S	S						B			S	S	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							T	T	S							T	T	T
Template Predicted Secondary structure				.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.													.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	R	I	S	I	F	G	S	E	F	P	S	G	H	T	A	D	V	L	S	L	S	I	N	S	L	N	A	N	M	F	I	S	G	S	C	D	T	T	V	R	L	W	D	L	R	I	T	S	R	A	V	R	T	Y	H	G	H	E	G	D	I	N	S	V	K	F	F	P	D	G	Q	R	F	G	T	G	S	D
Template Known Secondary structure												S	S	S	S			S									S	S	S									T	T	S							T	T	T	T											S	S									T	T	S	S							S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	C	R	L	F	D	M	R	T	G	H	Q	L	Q	V	Y	N	R	E	P	D	R	N	D	N	E	L	P	I	V	T	S	V	A	F	S	I	S	G	R	L	L	F	A	G	Y	S	N	G	D	.	.	.	.	C	Y	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							T	T	T	T											S	S	S			S	S		S		S						S	S	S	S							T	T	S		.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template SS confidence
																							270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.					.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure														.	.	.	.																								.
Query SS confidence														.	.	.	.																								.
Query Sequence		I	S	P	Q	G	G	E	P	R	Q	L	T	.	.	.	.	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E
Query Conservation														.	.	.	.																								.
Alig confidence														.	.	.	.																								.
Template Conservation
Template Sequence		W	D	T	L	L	A	E	M	V	L	N	L	G	T	L	Q	N	S	H	E	G	R	I	S	C	L	G	L	S	S	D	G	S	A	L	C	T	G	S	W	D	K	N	L	K	I	W	A	F	S	G	H	R
Template Known Secondary structure				T	T	T										S		S	S												S	S	S	S							T	T	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions