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Job DescriptionP31455
Confidence99.70%DateThu Jan 5 11:47:46 GMT 2012
Rank88Aligned Residues287
% Identity12%Templatec3fhcA_
PDB info PDB header:transport protein/hydrolaseChain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.........60.. .......70.........80........
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Query Sequence  FAPRNHLLTNTNTWTPDSQWLVFDVRPSGASFTGETIERVNIHTGE. . . . . . . . VEVIYRASQGAHVGVVTVHPKSEKYV
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Template Sequence  LLVPMKFPIHHLALSCDNLTLSACMMSSEY. . . GSIIAFFDVRTFSNEAQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV
Template Known Secondary structure 

SS

TTS
TTT...GGGGGS





SSSGGG

SS
TT
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   87..90.........100.........110...... ...120.........130.........140.........150.........160...
 
   8990.........100.........110.........120.........130.........140.........150.........160........
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Query Sequence  FIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTPGVLRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDL
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Template Sequence  AVCLADGSIAVLQVTETVKVCATL. . . . . . . . . . . . . . . . . . . . PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQE
Template Known Secondary structure  TTS
SSS....................
GGG

TTSSSTTS

TT

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   166...170.........180......... 190.........200.........210.........220.....
 
   169170.........180.........190.........200.........210.........220.........230.........240........
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Query Sequence  RNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKVPELFIVE
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Template Sequence  KKVIPCPPFYES. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DHPVRVLDVLWIGTYVFAIVY. . . .
Template Known Secondary structure 


TTS
T...........................................TS
TT....
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   226...230....... ..240.........250........
 
   249250.........260.........270.........280.........290.........300.........310.........320........
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Query Sequence  LPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQIAFLMRDDNGIVQLWLIS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . AAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYL. . . .
Template Known Secondary structure  ...........................TT

SSS



SS
TT





SS
B

SSS


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   259260.........270.........280.........290.........300.......
 
   329330.........340.........350.........360. ........370.........380.........390........ .400...
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Query Sequence  PQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVL. DNRIACAHAQSGEVEYLTEHHANSPSADAVVFSPDGQ. . . . WLAWM
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Template Sequence  . . . . . . . SYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSS. RAELPVTDKSDDSLPMGVVVDYTNAPVLMLLS
Template Known Secondary structure  .......TTTTTTBSB
TTSS


GGG.

B

B
TTS
B






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   308.310.........320.........330.........340....... ..350.........360.........370.........
 
   404.....410..
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Query Sequence  EGGQLWITE
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Template Sequence  TDGVLCPFY
Template Known Secondary structure  TTS
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   394.....400..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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