Job Description P31455 Confidence 99.36% Date Thu Jan 5 11:47:46 GMT 2012 Rank 115 Aligned Residues 249 % Identity 9% Template c3eweC_ PDB info PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex Resolution 3.50 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y
Query Conservation
Alig confidence																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	D	V	V	Y	D	F	Y	G	R	H	V	A	.	T	C	S	S	D	Q	H	I	K	V	F	K	L	D	K	D	T	S	N	W	E	L	S	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	A	H	D	S	S	I	V	A	I	D	W	A	S	P	E	Y	G	R	I	I	A	S
Template Known Secondary structure					B				S	S	S	S				.				S	S	S									T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S										T	T	T
Template Predicted Secondary structure																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		A	S	Y	D	K	T	V	K	L	W	E	E	W	N	K	L	C	T	L	N	D	S	K	G	S	L	Y	S	V	K	F	A	P	A	H	L	.	.	G	L	K	L	A	C	L	G	N	D	G	I	L	R	L	Y	D	A	L	E	P	S	D	L	R	S	W	T	L	T	S	E	M	K	V	S	D	F	C	L	S	W
Template Known Secondary structure				S	S	S																		S	S										T	T	T	.	.		S	B						T	T				B							T	T	S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	P	S	P	E	K	L	A	V	S	A	L	E	Q	A	I	I	Y	Q	R	L	H	V	A	A	K	L	P	G	H	K	S	L	I	R	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	A	P	S	Y	Q	L	I	A	T	G
Template Known Secondary structure													S	S																		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																																.	.	.	.	.	.	.	.	.	220	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E
Query Conservation																																																	.
Alig confidence							.	.	.	.																			.	.	.																		.
Template Conservation							.	.	.	.																			.	.	.
Template Sequence		C	K	D	G	R	.	.	.	.	I	R	I	F	K	I	T	E	N	L	Q	V	E	L	L	S	G	E	.	.	.	V	W	S	V	S	W	N	L	T	G	T	I	L	S	S	A	G	D	D	G	K	V	R	L	W	K	A	T	Y	S	N	E	F	K	C	M	S
Template Known Secondary structure			T	T	S		.	.	.	.												B			B				.	.	.								S	S	S								T	T	S									T	T	S
Template Predicted Secondary structure							.	.	.	.																			.	.	.
Template SS confidence
		235	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions