Job Description P31455 Confidence 99.87% Date Thu Jan 5 11:47:46 GMT 2012 Rank 34 Aligned Residues 299 % Identity 15% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																						.																																				.
Query SS confidence																						.																																				.
Query Sequence		K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	.	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	.	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I
Query Conservation																						.																																				.
Alig confidence																						.													.	.	.	.	.	.	.																	.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		R	I	L	Q	K	A	A	P	F	D	R	R	A	T	S	L	A	W	H	P	T	H	P	S	T	V	A	V	G	S	K	G	G	.	.	.	.	.	.	.	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A
Template Known Secondary structure		T									S	S									S	S		S	S							S	S	S	.	.	.	.	.	.	.							S	S	S		S									S	S	S								B		T	T		T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	M	E	G	T	T	R	L	Q	D	F	K	G	N	I	L	R	V	F	A	S	S	D	T	I	N	I	W	F	C	S	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W
Template Known Secondary structure				T	T	S							T	T	T										S	S	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T							S	S	S							T	T			B
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P
Query Conservation
Alig confidence																					.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	.	.	.	.	.	.	W	F	L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	V	R	G	K	A	S	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	S	S									T	T	S	T	.	.	.	.	.	.	T							T	T	S							T	T	T			S	S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	T	T	D	Q	K	S	E	.	.	.	.	I	R	V	Y	S	A	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S									T	T	S	S							S	S	S		.	.	.	.						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template SS confidence
																																										283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.					.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.							.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360														.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure															.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	E	P	R	Q	L	T	H	N	K	T	D	.	.	.	.	.	.	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V
Query Conservation															.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K	M	M	C	Q	L	Y	D	P	E	S	S	G	I	S	S	L	N
Template Known Secondary structure			S	S	S		S											T	T	S									S	S	S	S										T	T	S			S	S	S				S							S	S	S										T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	S	P	D	G	Q	W	L	A	W	M	E	G	G	Q	L	W	I	T	E	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	N	P	M	G	D	T	L	A	S	A	M	G	Y	H	I	L	I	W	S	Q	E
Template Known Secondary structure					S	S	S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions