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Job DescriptionP31455
Confidence99.84%DateThu Jan 5 11:47:46 GMT 2012
Rank45Aligned Residues303
% Identity12%Templatec3ei3B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RAMKQITFAPRNHLLTNTNTWTP. DSQWLVFDVRPSGASFTGETIERVNIHTGEVEVIYRA. SQGAHVGVVTVHPKSEKY
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Template Sequence  KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGG. . . . . . . DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ
Template Known Secondary structure  TT



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   135....140.........150.........160.........170 .........180.........190.........200.......
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  VFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTPGVLRGGSHVHVFSPNGERVSFTYNDHVMHELDPALD
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Template Sequence  LFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVD. . . . . . . . . . . . . . . . . . VSVSRQMLATGDSTGRLLLLGLDGH
Template Known Secondary structure  TTTTTS




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   208.210.........220.........230.........240.... .....250.........260.........
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  LRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKVPELFIV
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Template Sequence  EIFKEKLHKAKVTHAEFNPRCD. . . . . . WLMATSSVDATVKLWDLRN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   270.........280.........290. ........300.........310
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  ELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQIAFLMRDDNGIVQLWLI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN. . . EIRVY
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   311........320.........330.........340....... ..350..
 
   328.330.........340.... .....350.........360 .........370.........380.........390.
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Query Sequence  SPQGGEPRQLTHNKTDI. . . . . . QSAFNWHPSGEWLGFV. . . . . . . . . . LDNRIACAHAQSGEVEYLTEHHANSPSADAV
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Template Sequence  SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN
Template Known Secondary structure  TTBTTS
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B


TTS





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TTT
TT



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   353......360.........370.........380.........390.........400.........410.........420.........430..
 
   392.......400.........410....
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Query Sequence  VFSPDGQWLAWMEGGQLWITETD
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Template Sequence  KFSPTGDVLASGMGFNILIWNRE
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TTSSTT

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   433......440.........450.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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