Job Description P31455 Confidence 99.95% Date Thu Jan 5 11:47:46 GMT 2012 Rank 7 Aligned Residues 291 % Identity 13% Template c3dm0A_ PDB info PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Resolution 2.40 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																			.																														.	.	.	.
Query SS confidence																			.																														.	.	.	.
Query Sequence		F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	.	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	.	.	.	.	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H
Query Conservation																			.																														.	.	.	.
Alig confidence																			.												.	.	.	.	.	.	.												.	.	.	.																											.
Template Conservation																															.	.	.	.	.	.	.																																										.
Template Sequence		T	M	R	A	H	T	D	M	V	T	A	I	A	T	P	I	D	N	A	D	I	I	V	S	A	S	R	D	K	.	.	.	.	.	.	.	S	I	I	L	W	K	L	T	K	D	D	K	A	Y	G	V	A	Q	R	R	L	T	G	H	S	H	F	V	E	D	V	V	L	S	S	D	G	Q	F	A	L	.	S	G
Template Known Secondary structure							S	S									T	T			S							T	T	S	.	.	.	.	.	.	.										S	T	T		S											S	S									T	T	S	S				.
Template Predicted Secondary structure																															.	.	.	.	.	.	.																																										.
Template SS confidence
		1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.								.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.		1080	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	W	D	G	E	L	R	L	W	D	L	A	A	G	V	S	T	R	R	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	T	K	D	V	L	S	V	A	F	S	L	D	N	R	Q	I	V	S	A	S	R	D	R	T	I	K	L	W	N	T	L	G	E	C	K	Y	T
Template Known Secondary structure			T	T	S							T	T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S									T	T	S	S							T	T	S							T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1082	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.																					.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q
Query Conservation
Alig confidence																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	E	G	G	E	G	H	R	D	W	V	S	C	V	R	F	S	P	N	T	L	Q	.	P	T	I	V	S	A	S	W	D	K	T	V	K	V	W	N	L	S	N	C	K	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	T	T	S		S	S									S		S	S	S	.								T	T	S							T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1142	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.		.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	L	A	G	H	T	G	Y	V	S	T	V	A	V	S	P	D	G	S	L	C	A	S	G	G	K	D	G	V	.	.	.	.	V	L	L	W	D	L	A	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S									T	T	S	S							T	T	S	B	.	.	.	.						T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
																																								1188	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.					.	.	1220	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																									.																	.
Query SS confidence																																																									.																	.
Query Sequence		G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	.	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	.	M	E	G	G	Q	L	W
Query Conservation																																																									.																	.
Alig confidence												.																																													.																	.
Template Conservation												.
Template Sequence		G	K	K	L	Y	S	L	E	A	N	.	S	V	I	H	A	L	C	F	S	P	N	R	Y	W	L	C	A	A	T	E	H	G	I	K	I	W	D	L	E	S	K	S	I	V	E	D	L	K	V	D	L	K	K	V	I	Y	C	T	S	L	N	W	S	A	D	G	S	T	L	F	S	G	Y	T	D	G	V	I	R
Template Known Secondary structure		T							B		S	.	S									S	S	S	S							T	T							T	T	T	T																							T	T	S	S							T	T	S
Template Predicted Secondary structure												.
Template SS confidence
		1226	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.
		410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	W	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1321	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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