Job Description P31455 Confidence 99.94% Date Thu Jan 5 11:47:46 GMT 2012 Rank 13 Aligned Residues 356 % Identity 11% Template c3bwsA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Resolution 1.99 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		P	V	L	Y	Q	D	R	A	M	K	Q	I	T	F	.	.	.	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V
Query Conservation																.	.	.
Alig confidence																.	.	.																															.	.
Template Conservation																																																	.	.
Template Sequence		K	V	L	E	M	D	K	N	I	A	L	V	E	X	A	I	P	V	Y	K	D	E	K	E	I	E	L	K	L	S	S	P	G	F	Q	N	S	S	Y	R	I	R	K	P	E	E	L	.	.	N	E	K	L	I	A	L	D	K	E	G	I	T	H	R	F	I	S	R	F	K	T	G	F	Q	P	K	S	V	R	F
Template Known Secondary structure								T	T													T	T										T	T	B								S	S	G	G	G	G	.	.	T	T							B	T	T		S										S	S		B
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H
Query Conservation
Alig confidence										.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	N	T	R	L	A	I	.	P	L	L	E	D	E	G	X	D	V	L	D	I	N	S	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	R	L	S	P	P	E	K	Y	K	K	K	L	G	F	V	E	T	I	S	I	P	E	H	N	E	L	W	V	S	Q	X	Q	A	N	A	V	H
Template Known Secondary structure		S	S	S	S					.		B	T	T	S	S	S						T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T										G	G	G	T							G	G	G	T
Template Predicted Secondary structure										.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K
Query Conservation
Alig confidence																																.	.	.	.	.																														.	.
Template Conservation																																.	.	.	.	.																														.	.
Template Sequence		V	F	D	L	K	T	L	A	Y	K	A	T	V	D	L	T	G	K	W	S	K	I	L	L	Y	D	P	I	R	D	.	.	.	.	.	L	V	Y	C	S	N	W	I	S	E	D	I	S	V	I	D	R	K	T	K	L	E	I	R	K	T	D	K	I	.	.	G	L	P	R	G	L	L	L	S	K	D	G	K	E
Template Known Secondary structure					T	T	T										S	S	S	S								T	T	T	T	.	.	.	.	.							T	T	T	T							T	T	T	T										.	.	S									T	T	S	S
Template Predicted Secondary structure																																.	.	.	.	.																														.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	.	.	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D
Query Conservation																																																											.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	I	A	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	S	N	Q	E	S	G	G	G	R	L	G	I	Y	S	X	D	K	E	K	L	I	D	T	I	G	P	P	G	N	K	R	H	I	V	S	G	N	T	E	N	K	I	Y	V	S	D	X	C	C
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S		T	T		S										T	T	T	T																			S	S	T	T							T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.																								.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.																	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																							.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.																							.
Template Sequence		S	.	.	.	K	I	E	V	Y	D	L	K	E	K	K	V	Q	K	S	I	P	V	F	D	K	P	.	N	T	I	A	L	S	P	D	G	K	Y	L	Y	V	S	C	R	G	P	N	H	P	T	E	G	Y	L	K	K	G	L	V	L	G	K	V	Y	V	I	D	T	T	T	D	T	V	K	E	F	W	E	A	G
Template Known Secondary structure		T	.	.	.							T	T	T	T									S	S	S		.							T	T	S	S												T	T	T		T	T	S			S	S									T	T	T	T									S
Template Predicted Secondary structure			.	.	.																							.
Template SS confidence
		348				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.			.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	.	.	G	G	Q	L	W	I	T	E	T	D
Query Conservation																								.	.
Alig confidence		.	.	.																				.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	N	Q	P	T	G	L	D	V	S	P	D	N	R	Y	L	V	I	S	D	F	L	D	H	Q	I	R	V	Y	R	R	D
Template Known Secondary structure		.	.	.	S	S								T	T	S								T	T	T	T								T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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