Job Description P31455 Confidence 99.81% Date Thu Jan 5 11:47:46 GMT 2012 Rank 53 Aligned Residues 287 % Identity 11% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																															.	.
Query SS confidence																					.	.	.																															.	.
Query Sequence		Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	.	.	.	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	.	.	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V
Query Conservation																					.	.	.																															.	.
Alig confidence																					.	.	.													.	.	.	.	.	.	.												.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		Q	L	V	S	E	L	K	N	P	S	G	S	C	S	V	D	V	S	A	M	F	W	E	K	E	P	C	I	I	T	A	C	E	D	.	.	.	.	.	.	.	V	V	S	L	W	K	A	L	D	A	W	Q	W	E	K	L	Y	T	W	H	F	A	E	V	P	V	L	Q	I	V	P	V	P	D	V	Y	N	L	V
Template Known Secondary structure												S	S																					S	S	.	.	.	.	.	.	.								S	S	S	S	B											S	S									T	T			S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		856	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.								890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	V	A	L	G	N	L	E	I	R	E	I	R	A	L	F	C	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																															933	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	.	.	.	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F
Query Conservation																																																					.	.	.
Alig confidence																					.	.	.	.	.	.	.																										.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		Q	V	L	L	K	S	G	N	I	K	A	V	L	G	L	T	K	R	R	.	.	.	.	.	.	.	L	V	S	S	S	G	T	L	S	D	Q	Q	V	E	V	M	T	F	A	E	D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q	E	A	L	L	G	T	T
Template Known Secondary structure																	T	T	T		.	.	.	.	.	.	.						S	S	S	T	T										T	T	S												S	S										T	S	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		958	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.								.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030
					246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V
Query Conservation		.	.	.
Alig confidence		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		I	M	N	N	I	V	I	W	N	L	K	T	G	Q	L	L	K	K	M	H	I	D	D	A	S	V	C	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	S	E	M	G	L	L	F	I	V	L	S	P	V	F	Q	.	.	.
Template Known Secondary structure		T	T	S							T	T	T																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T												.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.																																1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																		.
Query SS confidence																								.	.	.																		.
Query Sequence		Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	.	.	.	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q
Query Conservation																								.	.	.																		.
Alig confidence		.																						.	.	.																		.																								.	.	.
Template Conservation		.																																																																		.	.	.
Template Sequence		.	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	P	P	G	Q	A	G	R	F	L	E	G	D	V	K	D	H	C	A	A	A	I	L	T	S	G	T	I	A	I	W	D	L	L	L	G	Q	C	T	A	L	L	P	P	V	Q	H	.	.	.	W	S	F	V	K	W	S	G	T	D	S
Template Known Secondary structure		.						T	T	T	T												T	T												T	T							T	T	S							T	T	T		S											.	.	.								S	S	S	S
Template Predicted Secondary structure		.																																																																		.	.	.
Template SS confidence
			1092	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.				.	.	.	1160	.	.	.	.	.	.	.
		399	400	.	.		.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		W	L	A	W	.	M	E	G	G	Q	L	W	I	T	E	T
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		H	L	L	A	G	Q	K	D	G	N	I	F	V	Y	H	Y
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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