Job Description P31455 Confidence 99.89% Date Thu Jan 5 11:47:46 GMT 2012 Rank 26 Aligned Residues 358 % Identity 15% Template c2ecfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia Resolution 2.80 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	.	.	.	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W
Query Conservation																																																.	.	.
Alig confidence																											.																					.	.	.																												.	.	.	.
Template Conservation																											.																																																			.	.	.	.
Template Sequence		T	L	M	K	P	K	V	A	P	D	G	S	R	V	T	F	L	R	G	K	D	S	D	R	N	.	Q	L	D	L	W	S	Y	D	I	G	S	G	Q	T	R	L	L	V	D	S	K	V	V	L	A	M	T	G	I	V	D	Y	Q	W	S	P	D	A	Q	R	L	L	F	P	L	G	G	E	L	Y	.	.	.	.
Template Known Secondary structure										T	T	S	S									S	S		T	T	.									T	T	T									G	G	G	T						S							T	T	S	S							T	T				.	.	.	.
Template Predicted Secondary structure																											.																																																			.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	D	L	K	Q	E	G	K	A	A	V	R	Q	L	T	H	G	E	G	F	A	T	D	A	K	L	S	P	K	G	G	F	V	S	F	I	R	.	G	R	N	L	W	V	I	D	L	A	S	G	R	Q	M	Q	L	T	A	D	G	S	T	T	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S		S	T	T	S			B				S	S	S									T	T	S	S							.	T	T							T	T	T	T											S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template SS confidence
																		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		181														.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	G	I	A	E	F	V	A	D	E	E	M	D	R	H	T	G	Y	W	W	A	P	D	D	S	A	I	A	Y	A	R	I	D	E	S	P	V	P	V	Q	K	R	Y	E	V	Y	A	D	R	T	D	V	I	E	Q	R	Y	P	A	A	G	D	A	N	V	Q	V	K	L	G	V	I	S	P	A	E	Q	A	Q
Template Known Secondary structure				S										S					S					T	T	S	S										T	T	S										S	S											B	T	T	S												S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I
Query Conservation
Alig confidence																																																																					.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		T	Q	W	I	D	L	G	K	E	Q	D	I	Y	L	A	R	V	N	W	R	D	P	Q	H	L	S	F	Q	R	Q	S	R	D	Q	K	K	L	D	L	V	E	V	T	L	A	S	N	Q	Q	R	V	L	A	H	E	T	S	P	T	W	V	P	L	H	N	S	L	.	.	.	.	R	F	L	D	D	G	S	I	L
Template Known Secondary structure									S		S	S											T	T									T	T	S	S									T	T	T												S	S						S			.	.	.	.				T	T	S
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	.	.	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S
Query Conservation																																																				.	.	.	.	.	.
Alig confidence				.	.														.																																	.	.	.	.	.	.																				.	.	.	.
Template Conservation				.	.														.																																																										.	.	.	.
Template Sequence		W	S	.	.	S	E	R	T	G	F	Q	H	L	Y	R	I	D	.	S	K	G	K	A	A	A	L	T	H	G	N	W	S	V	D	E	L	L	A	V	D	E	K	A	G	L	A	Y	F	R	A	G	I	E	S	A	R	E	S	Q	I	Y	A	V	P	L	Q	G	G	Q	P	Q	R	L	S	K	.	.	.	.	A
Template Known Secondary structure				.	.			T	T	S	S								.	S	S	S					S			S	S	S										T	T	T	T								S	S		T	T		B							T	T										.	.	.	.	S
Template Predicted Secondary structure				.	.														.																																																										.	.	.	.
Template SS confidence
		352	.			.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.					.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.						.	.	.	410	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	G	.	.	.	.	.	Q	L	W	I	T	E	T	D
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.
Template Conservation
Template Sequence		P	G	M	H	S	A	S	F	A	R	N	A	S	V	Y	V	D	S	W	S	N	N	S	T	P	P	Q	I	E	L	F	R	A	N
Template Known Secondary structure			S								T	T	S	S									T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions