Return to main results Retrieve Phyre Job Id

Job DescriptionP31455
Confidence99.89%DateThu Jan 5 11:47:46 GMT 2012
Rank27Aligned Residues373
% Identity12%Templatec1z68A_
PDB info PDB header:lyaseChain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.... .....20.........30.........40.........50 .........60.........70.........
Predicted Secondary structure 



...





















..










Query SS confidence 









. . .



































. .




























Query Sequence  VLYQDRAMKQ. . . ITFAPRNHLLTNTNTWTPDSQWLVFDVRPSGASFTG. . ETIERVNIHTGEVEVIYRASQGAHVGVVT
Query Conservation           
...

             




  


 
   
     ..  
       
    
             
Alig confidence 









...



































..



















..






Template Conservation   
     
    
                



  
            
      
 

 

    
    ..       
Template Sequence  VLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP. . RPIQYLC
Template Known Secondary structure  SSS


TTT
S
TTSS
SSS
TTTT

SS


..SSB

Template Predicted Secondary structure 





































..

Template SS confidence 















































































   77..80.........90.........100.........110.........120.........130.........140....... ..150....
 
   80.........90.........100.........110.........120.........130.........140.........150.........
Predicted Secondary structure 











































Query SS confidence 















































































Query Sequence  VHPKSEKYVFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTPGVLRGGSHVHVFSPNGERVSFTYNDHVM
Query Conservation 




  

                                                       



  

        
Alig confidence 













....
























































.....
Template Conservation 





 


  
 .... 
 
 
   
    

  
    
  
  
               




  
    .....
Template Sequence  WSPVGSKLAYVYQN. . . . NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE. . . . .
Template Known Secondary structure 
SSTT
TT....SSTTS






BTTTSS

TT
SS


TTSS.....
Template Predicted Secondary structure 






....

























.....
Template SS confidence 















































































   155....160........ .170.........180.........190.........200.........210.........220.....
 
   160.........170.........180.........190.........200.........210.........220.........230.........
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  HELDPALDLRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGE
Query Conservation                                                                             
 

 
Alig confidence  ..













































































Template Conservation  .. 
                        
   
  
    
   
                             

 

 
Template Sequence  . . FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER
Template Known Secondary structure  ..
TTS


SSSS


BTTS


SS






TS
SSSS
Template Predicted Secondary structure  ..















































Template SS confidence 















































































   226...230.........240.........250.........260.........270.........280.........290.........300...
 
   240.........250.........260.........270.........280.........290........ .300.........310....
Predicted Secondary structure 
























.....




Query SS confidence 


























































. . . . .















Query Sequence  KVPELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVP. . . . . RHWVRCNPQGTQIAFL
Query Conservation                                       
     
               .....      



   
  
Alig confidence 





................




































.....















Template Conservation        ................ 
      
   
                                             
Template Sequence  VCLQWL. . . . . . . . . . . . . . . . KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI
Template Known Secondary structure  ................SSTT
SSSSS

GGG
SSS
SSSSS




TTSS
Template Predicted Secondary structure  ................



































Template SS confidence 















































































   304..... 310.........320.........330.........340.........350.........360.......
 
   315....320.........330.........340.........350.........360.... .....370.........380 .....
Predicted Secondary structure 





















......




...




Query SS confidence 

















































. . . . . .















. . .




Query Sequence  MRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVLDNR. . . . . . IACAHAQSGEVEYLTE. . . HHANS
Query Conservation 
        
                        
 



  

  

  ......
   
   
       ...     
Alig confidence 

















































......















...




Template Conservation                         
     
                          
  
                    
Template Sequence  FSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER
Template Known Secondary structure 
TTS
SS
STT

S
SSS

SSS
GGG
TT
B
SSSS

SSTTTTTTT
Template Predicted Secondary structure 







































Template SS confidence 















































































   368.370.........380.........390.........400.........410.........420.........430.........440.......
 
   386...390.........400......
Predicted Secondary structure 








Query SS confidence 




















Query Sequence  PSADAVVFSPDGQWLAWMEGG
Query Conservation         




  

    
Alig confidence 




















Template Conservation          
 

       
 
Template Sequence  CQYYTASFSDYAKYYALVCYG
Template Known Secondary structure  B
B
GGGSS

Template Predicted Secondary structure 







Template SS confidence 




















   448.450.........460........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions