Job Description P31455 Confidence 99.89% Date Thu Jan 5 11:47:46 GMT 2012 Rank 27 Aligned Residues 373 % Identity 12% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		5	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																					.	.
Query SS confidence												.	.	.																																					.	.
Query Sequence		V	L	Y	Q	D	R	A	M	K	Q	.	.	.	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	.	.	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T
Query Conservation												.	.	.																																					.	.
Alig confidence												.	.	.																																					.	.																					.	.
Template Conservation																																																																									.	.
Template Sequence		V	L	Y	N	I	E	T	G	Q	S	Y	T	I	L	S	N	R	T	M	K	S	V	N	A	S	N	Y	G	L	S	P	D	R	Q	F	V	Y	L	E	S	D	Y	S	K	L	W	R	Y	S	Y	T	A	T	Y	Y	I	Y	D	L	S	N	G	E	F	V	R	G	N	E	L	P	.	.	R	P	I	Q	Y	L	C
Template Known Secondary structure						S	S	S														T	T	T		S						T	T	S	S												S	S	S											T	T	T	T					S	S				.	.	S	S	B
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M
Query Conservation
Alig confidence																.	.	.	.																																																										.	.	.	.	.
Template Conservation																.	.	.	.																																																										.	.	.	.	.
Template Sequence		W	S	P	V	G	S	K	L	A	Y	V	Y	Q	N	.	.	.	.	N	I	Y	L	K	Q	R	P	G	D	P	P	F	Q	I	T	F	N	G	R	E	N	K	I	F	N	G	I	P	D	W	V	Y	E	E	E	M	L	A	T	K	Y	A	L	W	W	S	P	N	G	K	F	L	A	Y	A	E	.	.	.	.	.
Template Known Secondary structure				S	S	T	T							T	T	.	.	.	.						S	S	T	T	S										B	T	T	T				S	S									T	T		S	S							T	T	S	S							.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.																																																										.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	F	N	D	T	D	I	P	V	I	A	Y	S	Y	Y	G	D	E	Q	Y	P	R	T	I	N	I	P	Y	P	K	A	G	A	K	N	P	V	V	R	I	F	I	I	D	T	T	Y	P	A	Y	V	G	P	Q	E	V	P	V	P	A	M	I	A	S	S	D	Y	Y	F	S	W	L	T	W	V	T	D	E	R
Template Known Secondary structure		.	.				T	T	S										S	S	S	S										B	T	T	S												S	S																		T	S										S	S	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.						.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	.	.	.	.	.	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L
Query Conservation																																																													.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	L	Q	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	V	Q	N	V	S	V	L	S	I	C	D	F	R	E	D	W	Q	T	W	D	C	P	K	T	Q	E	H	I	E	E	S	R	T	G	W	A	G	G	F	F	V	S	T	P	V	F	S	Y	D	A	I	S	Y	Y	K	I
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T											S	S	S	S	S					G	G	G							S	S	S		S	S	S	S	S								T	T	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.																	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380				.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.																	.	.	.
Query SS confidence																																																				.	.	.	.	.	.																	.	.	.
Query Sequence		M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	N	R	.	.	.	.	.	.	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	.	.	.	H	H	A	N	S
Query Conservation																																																				.	.	.	.	.	.																	.	.	.
Alig confidence																																																				.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		F	S	D	K	D	G	Y	K	H	I	H	Y	I	K	D	T	V	E	N	A	I	Q	I	T	S	G	K	W	E	A	I	N	I	F	R	V	T	Q	D	S	L	F	Y	S	S	N	E	F	E	E	Y	P	G	R	R	N	I	Y	R	I	S	I	G	S	Y	P	P	S	K	K	C	V	T	C	H	L	R	K	E	R
Template Known Secondary structure					T	T	S								S	S		S	T	T					S		S	S	S										S	S							S		G	G	G		T	T		B								S	S	S	S						S	S	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	Q	Y	Y	T	A	S	F	S	D	Y	A	K	Y	Y	A	L	V	C	Y	G
Template Known Secondary structure		B		B							G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions