Job Description P31455 Confidence 99.60% Date Thu Jan 5 11:47:46 GMT 2012 Rank 98 Aligned Residues 300 % Identity 13% Template c1yr2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity Resolution 1.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	Y	Q	D	R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.																										.	.																				.	.
Template Conservation														.	.	.	.	.	.	.	.	.																										.	.																				.	.
Template Sequence		R	V	L	L	D	P	N	T	W	A	T	A	.	.	.	.	.	.	.	.	.	L	D	A	W	A	A	S	D	D	G	R	L	L	A	Y	S	V	Q	D	G	G	S	D	W	R	.	.	T	V	K	F	V	G	V	A	D	G	K	P	L	A	D	E	L	K	W	.	.	V	K	F	S	G	L	A	W	L	G	N
Template Known Secondary structure							G	G	G					.	.	.	.	.	.	.	.	.								T	T	S	S									T	T		S			.	.							T	T	T											.	.			S						S	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.																										.	.																				.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.
		84	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		S	E	K	Y	V	F	I	.	.	.	.	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		D	A	L	L	Y	S	R	F	A	E	P	L	N	Y	N	Q	T	V	W	L	H	R	L	G	T	P	Q	S	A	D	Q	P	V	F	A	T	P	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	R	G	H	G	A	S	V	S	S	D	G	R	W	V	V	I	T	S	S	E	G	.	.
Template Known Secondary structure		S																						T	T	S		G	G	G								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T									T	T	S										T	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	V	N	T	V	H	V	A	R	V	T	N	G	K	I	G	P	V	T	A	L	I	P	D	L	K	A	Q	W	D	F	V	D	G	V	G	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S											T	T											S	S	S	S									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																											290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																							.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																							.
Template Sequence		Q	L	W	F	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	G	A	P	L	K	K	I	V	R	V	D	L	S	G	S	T	P	R	F	D	T	V	V	P	.	.	.	.	.	.	.	.	E	S	K	D	N	L	E	S	V	G	I	A	G	N	R	L	F	A	S	Y	I	H	.	D
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		T	T									S	S	S	S									.	.	.	.	.	.	.	.			S	S									B	T									.	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																							.
Template SS confidence
		329	330	.	.	.	.																	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360									.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.					.	.	.	390
Predicted Secondary structure																																														.	.	.	.	.																								.	.	.	.
Query SS confidence																																														.	.	.	.	.																								.	.	.	.
Query Sequence		G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	N	.	.	.	.	.	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	.	.	.	.	S	A	D	A
Query Conservation																																														.	.	.	.	.																								.	.	.	.
Alig confidence																																														.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		A	K	S	Q	V	L	A	F	D	L	D	G	K	P	A	G	A	V	S	L	P	G	I	G	S	A	S	G	L	S	G	R	P	G	D	R	H	A	Y	L	S	F	S	S	F	T	Q	P	A	T	V	L	A	L	D	P	A	T	A	K	T	T	P	W	E	P	V	H	L	T	F	D	P	A	D	F	R	V	E	Q
Template Known Secondary structure		T									T	T	S							B		S	S	S										B	T		S									T	T										T	T	T	T						S					S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		391	.	.		.	.	.	.	.	.	400
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		V	V	F	.	S	P	D	G	Q	W	L
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		V	F	Y	P	S	K	D	G	T	K	V
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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