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Job DescriptionP31455
Confidence99.89%DateThu Jan 5 11:47:46 GMT 2012
Rank25Aligned Residues359
% Identity11%Templatec1xfdD_
PDB info PDB header:membrane proteinChain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10....... ..20.........30.........40....... ..50.........60......... 70.........80...
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Query Sequence  QDRAMKQITF. APRNHLLTNTNTWTPDSQWLVFDVRPSGAS. . FTGETIERVNIHTGEVEVIYRA. SQGAHVGVVTVHPK
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Template Sequence  ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK
Template Known Secondary structure  GG



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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   84.....90.........100.........110.........120.........130.........140.........150.. .......160..
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Query Sequence  SEKYVFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTPGVLRGGSHVHVFSPNGERVSF. TYNDHVMHEL
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Template Sequence  GQQLIFIFEN. . . . NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM
Template Known Secondary structure  TT
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   251........260 .........270.........280.........290.........300.........310.........320......
 
   163......170.........180.........190.........200.........210.........220.... .....230.....
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Query Sequence  DPALDLRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGN. . . . . . . HALAFIGDTLS
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Template Sequence  ELPTYT. . . . . . . . . . . . . . . . . GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA
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   327..330.. .......340.........350.........360.........370.........380.........
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  PKGEKVPELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQIAFLM
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Template Sequence  TSTKVAVTWL. . . . . . . . . . . . . . . . NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP. . . VFSKDGRKFFFIR
Template Known Secondary structure  SSS................TTS
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   390......... 400.........410.........420.........430....... ..440.........450
 
   316...320 .........330.........340.........350.........360. ........370... ......380
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Query Sequence  RDDNG. . . . . . . . IVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWLGFVL. . . . . . DNRIACAHAQSG. EVEYLTE
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Template Sequence  AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC
Template Known Secondary structure 

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   451........460.........470.........480.........490.........500.........510.........520.........530
 
   381........390.........400......
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Query Sequence  HHANSPSADAVVFSPDGQWLAWMEGG
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Template Sequence  DLVENCTYFSASFSHSMDFFLLKCEG
Template Known Secondary structure  TSSSS




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   531........540.........550......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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