Job Description P31455 Confidence 99.89% Date Thu Jan 5 11:47:46 GMT 2012 Rank 25 Aligned Residues 359 % Identity 11% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		8	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure												.																															.	.																							.
Query SS confidence												.																															.	.																							.
Query Sequence		Q	D	R	A	M	K	Q	I	T	F	.	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	.	.	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	.	S	Q	G	A	H	V	G	V	V	T	V	H	P	K
Query Conservation												.																															.	.																							.
Alig confidence												.																															.	.																							.
Template Conservation
Template Sequence		E	T	N	T	S	T	V	L	I	E	G	K	K	I	E	S	L	R	A	I	R	Y	E	I	S	P	D	R	E	Y	A	L	F	S	Y	N	V	E	P	I	Y	Q	H	S	Y	T	G	Y	Y	V	L	S	K	I	P	H	G	D	P	Q	S	L	D	P	P	E	V	S	N	A	K	L	Q	Y	A	G	W	G	P	K
Template Known Secondary structure		G	G									T	T	T	T	T	T	T			S						T	T	S	S								S				S	S	S				B							S	S	S									T	T			S			B	S	B			B		S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	.	T	Y	N	D	H	V	M	H	E	L
Query Conservation																																																																							.
Alig confidence												.	.	.	.																																																								.
Template Conservation												.	.	.	.
Template Sequence		G	Q	Q	L	I	F	I	F	E	N	.	.	.	.	N	I	Y	Y	C	A	H	V	G	K	Q	A	I	R	V	V	S	T	G	K	E	G	V	I	Y	N	G	L	S	D	W	L	Y	E	E	E	I	L	K	T	H	I	A	H	W	W	S	P	D	G	T	R	L	A	Y	A	A	I	N	D	S	R	V	P	I	M
Template Known Secondary structure		T	T							T	T	.	.	.	.						S	S	S	S	S										B	T	T	T													T	T	S	S	S	S							T	T	S	S										T	T	S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.
Query Sequence		D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	.	.	.	.	.	.	.	H	A	L	A	F	I	G	D	T	L	S
Query Conservation																																																																.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	P	T	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	I	Y	P	T	V	K	P	Y	H	Y	P	K	A	G	S	E	N	P	S	I	S	L	H	V	I	G	L	N	G	P	T	H	D	L	E	M	M	P	P	D	D	P	R	M	R	E	Y	Y	I	T	M	V	K	W	A
Template Known Secondary structure							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S										B	T	T	S												S	S	S	S												G	G	G	S	S									S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.																		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Sequence		T	S	T	K	V	A	V	T	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	A	Q	N	V	S	I	L	T	L	C	D	A	T	T	G	V	C	T	K	K	H	E	D	E	S	E	A	W	L	H	R	Q	N	E	E	P	.	.	.	V	F	S	K	D	G	R	K	F	F	F	I	R
Template Known Secondary structure		S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S										T	T	T												S	S										.	.	.				T	T	S		S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.																	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.				.	.	440	.	.	.	.	.	.	.	.	.	450
		316	.	.	.	320									.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380
Predicted Secondary structure							.	.	.	.	.	.	.	.																																										.	.	.	.	.	.													.
Query SS confidence							.	.	.	.	.	.	.	.																																										.	.	.	.	.	.													.
Query Sequence		R	D	D	N	G	.	.	.	.	.	.	.	.	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	.	.	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	.	E	V	E	Y	L	T	E
Query Conservation							.	.	.	.	.	.	.	.																																										.	.	.	.	.	.													.
Alig confidence							.	.	.	.	.	.	.	.																																										.	.	.	.	.	.													.
Template Conservation
Template Sequence		A	I	P	Q	G	G	R	G	K	F	Y	H	I	T	V	S	S	S	Q	P	N	S	S	N	D	N	I	Q	S	I	T	S	G	D	W	D	V	T	K	I	L	A	Y	D	E	K	G	N	K	I	Y	F	L	S	T	E	D	L	P	R	R	R	Q	L	Y	S	A	N	T	V	G	N	F	N	R	Q	C	L	S	C
Template Known Secondary structure						S	S	S	S										S	S			S	S	S					B	S			S	S	S										T	T	T	T							S	S	S		T	T									S	S	T	T				B		S	S	T
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	V	E	N	C	T	Y	F	S	A	S	F	S	H	S	M	D	F	F	L	L	K	C	E	G
Template Known Secondary structure		T	S	S	S	S										T	T	S	S								S
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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